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#P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method

Automata networks are a very general model of interacting entities, with applications to biological phenomena such as gene regulation. In many contexts, the order in which entities update their state is unknown, and the dynamics may be very sensitive to changes in this schedule of updates. Since the...

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Autores principales: Noûs, Camille, Perrot, Kévin, Sené, Sylvain, Venturini, Lucas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7309494/
http://dx.doi.org/10.1007/978-3-030-51466-2_30
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author Noûs, Camille
Perrot, Kévin
Sené, Sylvain
Venturini, Lucas
author_facet Noûs, Camille
Perrot, Kévin
Sené, Sylvain
Venturini, Lucas
author_sort Noûs, Camille
collection PubMed
description Automata networks are a very general model of interacting entities, with applications to biological phenomena such as gene regulation. In many contexts, the order in which entities update their state is unknown, and the dynamics may be very sensitive to changes in this schedule of updates. Since the works of Aracena et al., it is known that update digraphs are pertinent objects to study non-equivalent block-sequential update schedules. We prove that counting the number of equivalence classes, that is a tight upper bound on the synchronism sensitivity of a given network, is [Formula: see text]-complete. The problem is nevertheless computable in quasi-quadratic time for oriented cacti, and for oriented series-parallel graphs thanks to a decomposition method.
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spelling pubmed-73094942020-06-23 #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method Noûs, Camille Perrot, Kévin Sené, Sylvain Venturini, Lucas Beyond the Horizon of Computability Article Automata networks are a very general model of interacting entities, with applications to biological phenomena such as gene regulation. In many contexts, the order in which entities update their state is unknown, and the dynamics may be very sensitive to changes in this schedule of updates. Since the works of Aracena et al., it is known that update digraphs are pertinent objects to study non-equivalent block-sequential update schedules. We prove that counting the number of equivalence classes, that is a tight upper bound on the synchronism sensitivity of a given network, is [Formula: see text]-complete. The problem is nevertheless computable in quasi-quadratic time for oriented cacti, and for oriented series-parallel graphs thanks to a decomposition method. 2020-06-24 /pmc/articles/PMC7309494/ http://dx.doi.org/10.1007/978-3-030-51466-2_30 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Noûs, Camille
Perrot, Kévin
Sené, Sylvain
Venturini, Lucas
#P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method
title #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method
title_full #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method
title_fullStr #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method
title_full_unstemmed #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method
title_short #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method
title_sort #p-completeness of counting update digraphs, cacti, and series-parallel decomposition method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7309494/
http://dx.doi.org/10.1007/978-3-030-51466-2_30
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