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#P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method
Automata networks are a very general model of interacting entities, with applications to biological phenomena such as gene regulation. In many contexts, the order in which entities update their state is unknown, and the dynamics may be very sensitive to changes in this schedule of updates. Since the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7309494/ http://dx.doi.org/10.1007/978-3-030-51466-2_30 |
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author | Noûs, Camille Perrot, Kévin Sené, Sylvain Venturini, Lucas |
author_facet | Noûs, Camille Perrot, Kévin Sené, Sylvain Venturini, Lucas |
author_sort | Noûs, Camille |
collection | PubMed |
description | Automata networks are a very general model of interacting entities, with applications to biological phenomena such as gene regulation. In many contexts, the order in which entities update their state is unknown, and the dynamics may be very sensitive to changes in this schedule of updates. Since the works of Aracena et al., it is known that update digraphs are pertinent objects to study non-equivalent block-sequential update schedules. We prove that counting the number of equivalence classes, that is a tight upper bound on the synchronism sensitivity of a given network, is [Formula: see text]-complete. The problem is nevertheless computable in quasi-quadratic time for oriented cacti, and for oriented series-parallel graphs thanks to a decomposition method. |
format | Online Article Text |
id | pubmed-7309494 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
record_format | MEDLINE/PubMed |
spelling | pubmed-73094942020-06-23 #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method Noûs, Camille Perrot, Kévin Sené, Sylvain Venturini, Lucas Beyond the Horizon of Computability Article Automata networks are a very general model of interacting entities, with applications to biological phenomena such as gene regulation. In many contexts, the order in which entities update their state is unknown, and the dynamics may be very sensitive to changes in this schedule of updates. Since the works of Aracena et al., it is known that update digraphs are pertinent objects to study non-equivalent block-sequential update schedules. We prove that counting the number of equivalence classes, that is a tight upper bound on the synchronism sensitivity of a given network, is [Formula: see text]-complete. The problem is nevertheless computable in quasi-quadratic time for oriented cacti, and for oriented series-parallel graphs thanks to a decomposition method. 2020-06-24 /pmc/articles/PMC7309494/ http://dx.doi.org/10.1007/978-3-030-51466-2_30 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Noûs, Camille Perrot, Kévin Sené, Sylvain Venturini, Lucas #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method |
title | #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method |
title_full | #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method |
title_fullStr | #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method |
title_full_unstemmed | #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method |
title_short | #P-completeness of Counting Update Digraphs, Cacti, and Series-Parallel Decomposition Method |
title_sort | #p-completeness of counting update digraphs, cacti, and series-parallel decomposition method |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7309494/ http://dx.doi.org/10.1007/978-3-030-51466-2_30 |
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