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Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events

Introduction: The Minimum Information About BIobank data Sharing (MIABIS) was initiated in 2012. MIABIS aims to create a common biobank terminology to facilitate data sharing in biobanks and sample collections. The MIABIS Core terminology consists of three components describing biobanks, sample coll...

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Autores principales: Eklund, Niina, Andrianarisoa, Ny Haingo, van Enckevort, Esther, Anton, Gabriele, Debucquoy, Annelies, Müller, Heimo, Zaharenko, Linda, Engels, Cäcilia, Ebert, Lars, Neumann, Michael, Geeraert, Joachim, T'Joen, Veronique, Demski, Hans, Caboux, Élodie, Proynova, Rumyana, Parodi, Barbara, Mate, Sebastian, van Iperen, Erik, Merino-Martinez, Roxana, Quinlan, Philip R., Holub, Petr, Silander, Kaisa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Mary Ann Liebert, Inc., publishers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7310316/
https://www.ncbi.nlm.nih.gov/pubmed/32302498
http://dx.doi.org/10.1089/bio.2019.0129
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author Eklund, Niina
Andrianarisoa, Ny Haingo
van Enckevort, Esther
Anton, Gabriele
Debucquoy, Annelies
Müller, Heimo
Zaharenko, Linda
Engels, Cäcilia
Ebert, Lars
Neumann, Michael
Geeraert, Joachim
T'Joen, Veronique
Demski, Hans
Caboux, Élodie
Proynova, Rumyana
Parodi, Barbara
Mate, Sebastian
van Iperen, Erik
Merino-Martinez, Roxana
Quinlan, Philip R.
Holub, Petr
Silander, Kaisa
author_facet Eklund, Niina
Andrianarisoa, Ny Haingo
van Enckevort, Esther
Anton, Gabriele
Debucquoy, Annelies
Müller, Heimo
Zaharenko, Linda
Engels, Cäcilia
Ebert, Lars
Neumann, Michael
Geeraert, Joachim
T'Joen, Veronique
Demski, Hans
Caboux, Élodie
Proynova, Rumyana
Parodi, Barbara
Mate, Sebastian
van Iperen, Erik
Merino-Martinez, Roxana
Quinlan, Philip R.
Holub, Petr
Silander, Kaisa
author_sort Eklund, Niina
collection PubMed
description Introduction: The Minimum Information About BIobank data Sharing (MIABIS) was initiated in 2012. MIABIS aims to create a common biobank terminology to facilitate data sharing in biobanks and sample collections. The MIABIS Core terminology consists of three components describing biobanks, sample collections, and studies, in which information on samples and sample donors is provided at aggregated form. However, there is also a need to describe samples and sample donors at an individual level to allow more elaborate queries on available biobank samples and data. Therefore the MIABIS terminology has now been extended with components describing samples and sample donors at an individual level. Materials and Methods: The components were defined according to specific scope and use cases by a large group of experts, and through several cycles of reviews, according to the new MIABIS governance model of BBMRI-ERIC (Biobanking and Biomolecular Resources Research Infrastructure–European Research Infrastructure Consortium). The guiding principles applied in developing these components included the following terms: model should consider only samples of human origin, model should be applicable to all types of samples and all sample donors, and model should describe the current status of samples stored in a given biobank. Results: A minimal set of standard attributes for defining samples and sample donors is presented here. We added an “event” component to describe attributes that are not directly describing samples or sample donors but are tightly related to them. To better utilize the generic data model, we suggest a procedure by which interoperability can be promoted, using specific MIABIS profiles. Discussion: The MIABIS sample and donor component extensions and the new generic data model complement the existing MIABIS Core 2.0 components, and substantially increase the potential usability of this terminology for better describing biobank samples and sample donors. They also support the use of individual level data about samples and sample donors to obtain accurate and detailed biobank availability queries.
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spelling pubmed-73103162020-06-24 Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events Eklund, Niina Andrianarisoa, Ny Haingo van Enckevort, Esther Anton, Gabriele Debucquoy, Annelies Müller, Heimo Zaharenko, Linda Engels, Cäcilia Ebert, Lars Neumann, Michael Geeraert, Joachim T'Joen, Veronique Demski, Hans Caboux, Élodie Proynova, Rumyana Parodi, Barbara Mate, Sebastian van Iperen, Erik Merino-Martinez, Roxana Quinlan, Philip R. Holub, Petr Silander, Kaisa Biopreserv Biobank Original Articles Introduction: The Minimum Information About BIobank data Sharing (MIABIS) was initiated in 2012. MIABIS aims to create a common biobank terminology to facilitate data sharing in biobanks and sample collections. The MIABIS Core terminology consists of three components describing biobanks, sample collections, and studies, in which information on samples and sample donors is provided at aggregated form. However, there is also a need to describe samples and sample donors at an individual level to allow more elaborate queries on available biobank samples and data. Therefore the MIABIS terminology has now been extended with components describing samples and sample donors at an individual level. Materials and Methods: The components were defined according to specific scope and use cases by a large group of experts, and through several cycles of reviews, according to the new MIABIS governance model of BBMRI-ERIC (Biobanking and Biomolecular Resources Research Infrastructure–European Research Infrastructure Consortium). The guiding principles applied in developing these components included the following terms: model should consider only samples of human origin, model should be applicable to all types of samples and all sample donors, and model should describe the current status of samples stored in a given biobank. Results: A minimal set of standard attributes for defining samples and sample donors is presented here. We added an “event” component to describe attributes that are not directly describing samples or sample donors but are tightly related to them. To better utilize the generic data model, we suggest a procedure by which interoperability can be promoted, using specific MIABIS profiles. Discussion: The MIABIS sample and donor component extensions and the new generic data model complement the existing MIABIS Core 2.0 components, and substantially increase the potential usability of this terminology for better describing biobank samples and sample donors. They also support the use of individual level data about samples and sample donors to obtain accurate and detailed biobank availability queries. Mary Ann Liebert, Inc., publishers 2020-06-01 2020-06-12 /pmc/articles/PMC7310316/ /pubmed/32302498 http://dx.doi.org/10.1089/bio.2019.0129 Text en © Niina Eklund et al., 2020; Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Eklund, Niina
Andrianarisoa, Ny Haingo
van Enckevort, Esther
Anton, Gabriele
Debucquoy, Annelies
Müller, Heimo
Zaharenko, Linda
Engels, Cäcilia
Ebert, Lars
Neumann, Michael
Geeraert, Joachim
T'Joen, Veronique
Demski, Hans
Caboux, Élodie
Proynova, Rumyana
Parodi, Barbara
Mate, Sebastian
van Iperen, Erik
Merino-Martinez, Roxana
Quinlan, Philip R.
Holub, Petr
Silander, Kaisa
Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events
title Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events
title_full Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events
title_fullStr Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events
title_full_unstemmed Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events
title_short Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events
title_sort extending the minimum information about biobank data sharing terminology to describe samples, sample donors, and events
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7310316/
https://www.ncbi.nlm.nih.gov/pubmed/32302498
http://dx.doi.org/10.1089/bio.2019.0129
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