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Development of a droplet digital PCR method for detection of Streptococcus agalactiae

BACKGROUND: Streptococcus agalactiae (GBS) is the causative pathogen of puerperal sepsis in pregnant women and pneumonia, sepsis and meningitis in infants. Infection of GBS is responsible for the increased morbidity in pregnant women and the elderly, and bring challenges to clinical diagnosis and tr...

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Autores principales: Zeng, Yi-Fan, Chen, Chu-Mao, Li, Xiao-Yan, Chen, Jun-Jiang, Wang, Yan-Ge, Ouyang, Shi, Ji, Tian-Xing, Xia, Yong, Guo, Xu-Guang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7310480/
https://www.ncbi.nlm.nih.gov/pubmed/32576134
http://dx.doi.org/10.1186/s12866-020-01857-w
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author Zeng, Yi-Fan
Chen, Chu-Mao
Li, Xiao-Yan
Chen, Jun-Jiang
Wang, Yan-Ge
Ouyang, Shi
Ji, Tian-Xing
Xia, Yong
Guo, Xu-Guang
author_facet Zeng, Yi-Fan
Chen, Chu-Mao
Li, Xiao-Yan
Chen, Jun-Jiang
Wang, Yan-Ge
Ouyang, Shi
Ji, Tian-Xing
Xia, Yong
Guo, Xu-Guang
author_sort Zeng, Yi-Fan
collection PubMed
description BACKGROUND: Streptococcus agalactiae (GBS) is the causative pathogen of puerperal sepsis in pregnant women and pneumonia, sepsis and meningitis in infants. Infection of GBS is responsible for the increased morbidity in pregnant women and the elderly, and bring challenges to clinical diagnosis and treatment. However, culture-based approaches to detect S.agalactiae is time-consuming with limited sensitivity. Besides, real-time quantitative PCR demands expensive instruments with tedious steps. Thus, we aim to establish a new detection method for more accurate and rapid detection of S.agalactiae. RESULTS: The ddPCR primer targeted the CpsE gene showed better amplified efficiency in the reaction. The limit of detection for GBS DNA with ddPCR was able to reach 5 pg/μL. Moreover, no positive amplified signals could be detected in the reactions which served 11 non-GBS strains DNA as templates. Furthermore, the coefficient of variation of this method was 4.5%, indicating excellent repeatability of ddPCR assay. CONCLUSIONS: In our study, ddPCR was performed as a rapid detection of S.agalactiae with high sensitivity and specificity. This technique can promote the accuracy of the diagnosis of GBS infection and provide a scientific basis for clinical treatment.
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spelling pubmed-73104802020-06-23 Development of a droplet digital PCR method for detection of Streptococcus agalactiae Zeng, Yi-Fan Chen, Chu-Mao Li, Xiao-Yan Chen, Jun-Jiang Wang, Yan-Ge Ouyang, Shi Ji, Tian-Xing Xia, Yong Guo, Xu-Guang BMC Microbiol Research Article BACKGROUND: Streptococcus agalactiae (GBS) is the causative pathogen of puerperal sepsis in pregnant women and pneumonia, sepsis and meningitis in infants. Infection of GBS is responsible for the increased morbidity in pregnant women and the elderly, and bring challenges to clinical diagnosis and treatment. However, culture-based approaches to detect S.agalactiae is time-consuming with limited sensitivity. Besides, real-time quantitative PCR demands expensive instruments with tedious steps. Thus, we aim to establish a new detection method for more accurate and rapid detection of S.agalactiae. RESULTS: The ddPCR primer targeted the CpsE gene showed better amplified efficiency in the reaction. The limit of detection for GBS DNA with ddPCR was able to reach 5 pg/μL. Moreover, no positive amplified signals could be detected in the reactions which served 11 non-GBS strains DNA as templates. Furthermore, the coefficient of variation of this method was 4.5%, indicating excellent repeatability of ddPCR assay. CONCLUSIONS: In our study, ddPCR was performed as a rapid detection of S.agalactiae with high sensitivity and specificity. This technique can promote the accuracy of the diagnosis of GBS infection and provide a scientific basis for clinical treatment. BioMed Central 2020-06-23 /pmc/articles/PMC7310480/ /pubmed/32576134 http://dx.doi.org/10.1186/s12866-020-01857-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Zeng, Yi-Fan
Chen, Chu-Mao
Li, Xiao-Yan
Chen, Jun-Jiang
Wang, Yan-Ge
Ouyang, Shi
Ji, Tian-Xing
Xia, Yong
Guo, Xu-Guang
Development of a droplet digital PCR method for detection of Streptococcus agalactiae
title Development of a droplet digital PCR method for detection of Streptococcus agalactiae
title_full Development of a droplet digital PCR method for detection of Streptococcus agalactiae
title_fullStr Development of a droplet digital PCR method for detection of Streptococcus agalactiae
title_full_unstemmed Development of a droplet digital PCR method for detection of Streptococcus agalactiae
title_short Development of a droplet digital PCR method for detection of Streptococcus agalactiae
title_sort development of a droplet digital pcr method for detection of streptococcus agalactiae
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7310480/
https://www.ncbi.nlm.nih.gov/pubmed/32576134
http://dx.doi.org/10.1186/s12866-020-01857-w
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