Cargando…
In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1
β-glucosidases (Bgl) are widely utilized for releasing non-reducing terminal glucosyl residues. Nevertheless, feedback inhibition by glucose end product has limited its application. A noticeable exception has been found for β-glucosidases of the glycoside hydrolase (GH) family 1, which exhibit toler...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7311958/ https://www.ncbi.nlm.nih.gov/pubmed/32512945 http://dx.doi.org/10.3390/ijms21114035 |
_version_ | 1783549623214800896 |
---|---|
author | Mohamad Sobri, Mohamad Farhan Abd-Aziz, Suraini Abu Bakar, Farah Diba Ramli, Norhayati |
author_facet | Mohamad Sobri, Mohamad Farhan Abd-Aziz, Suraini Abu Bakar, Farah Diba Ramli, Norhayati |
author_sort | Mohamad Sobri, Mohamad Farhan |
collection | PubMed |
description | β-glucosidases (Bgl) are widely utilized for releasing non-reducing terminal glucosyl residues. Nevertheless, feedback inhibition by glucose end product has limited its application. A noticeable exception has been found for β-glucosidases of the glycoside hydrolase (GH) family 1, which exhibit tolerance and even stimulation by glucose. In this study, using local isolate Trichoderma asperellum UPM1, the gene encoding β-glucosidase from GH family 1, hereafter designated as TaBgl2, was isolated and characterized via in-silico analyses. A comparison of enzyme activity was subsequently made by heterologous expression in Escherichia coli BL21(DE3). The presence of N-terminal signature, cis-peptide bonds, conserved active site motifs, non-proline cis peptide bonds, substrate binding, and a lone conserved stabilizing tryptophan (W) residue confirms the identity of Trichoderma sp. GH family 1 β-glucosidase isolated. Glucose tolerance was suggested by the presence of 14 of 22 known consensus residues, along with corresponding residues L167 and P172, crucial in the retention of the active site’s narrow cavity. Retention of 40% of relative hydrolytic activity on ρ-nitrophenyl-β-D-glucopyranoside (ρNPG) in a concentration of 0.2 M glucose was comparable to that of GH family 1 β-glucosidase (Cel1A) from Trichoderma reesei. This research thus underlines the potential in the prediction of enzymatic function, and of industrial importance, glucose tolerance of family 1 β-glucosidases following relevant in-silico analyses. |
format | Online Article Text |
id | pubmed-7311958 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-73119582020-06-25 In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1 Mohamad Sobri, Mohamad Farhan Abd-Aziz, Suraini Abu Bakar, Farah Diba Ramli, Norhayati Int J Mol Sci Article β-glucosidases (Bgl) are widely utilized for releasing non-reducing terminal glucosyl residues. Nevertheless, feedback inhibition by glucose end product has limited its application. A noticeable exception has been found for β-glucosidases of the glycoside hydrolase (GH) family 1, which exhibit tolerance and even stimulation by glucose. In this study, using local isolate Trichoderma asperellum UPM1, the gene encoding β-glucosidase from GH family 1, hereafter designated as TaBgl2, was isolated and characterized via in-silico analyses. A comparison of enzyme activity was subsequently made by heterologous expression in Escherichia coli BL21(DE3). The presence of N-terminal signature, cis-peptide bonds, conserved active site motifs, non-proline cis peptide bonds, substrate binding, and a lone conserved stabilizing tryptophan (W) residue confirms the identity of Trichoderma sp. GH family 1 β-glucosidase isolated. Glucose tolerance was suggested by the presence of 14 of 22 known consensus residues, along with corresponding residues L167 and P172, crucial in the retention of the active site’s narrow cavity. Retention of 40% of relative hydrolytic activity on ρ-nitrophenyl-β-D-glucopyranoside (ρNPG) in a concentration of 0.2 M glucose was comparable to that of GH family 1 β-glucosidase (Cel1A) from Trichoderma reesei. This research thus underlines the potential in the prediction of enzymatic function, and of industrial importance, glucose tolerance of family 1 β-glucosidases following relevant in-silico analyses. MDPI 2020-06-04 /pmc/articles/PMC7311958/ /pubmed/32512945 http://dx.doi.org/10.3390/ijms21114035 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Mohamad Sobri, Mohamad Farhan Abd-Aziz, Suraini Abu Bakar, Farah Diba Ramli, Norhayati In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1 |
title | In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1 |
title_full | In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1 |
title_fullStr | In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1 |
title_full_unstemmed | In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1 |
title_short | In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from Trichoderma asperellum UPM1 |
title_sort | in-silico characterization of glycosyl hydrolase family 1 β-glucosidase from trichoderma asperellum upm1 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7311958/ https://www.ncbi.nlm.nih.gov/pubmed/32512945 http://dx.doi.org/10.3390/ijms21114035 |
work_keys_str_mv | AT mohamadsobrimohamadfarhan insilicocharacterizationofglycosylhydrolasefamily1bglucosidasefromtrichodermaasperellumupm1 AT abdazizsuraini insilicocharacterizationofglycosylhydrolasefamily1bglucosidasefromtrichodermaasperellumupm1 AT abubakarfarahdiba insilicocharacterizationofglycosylhydrolasefamily1bglucosidasefromtrichodermaasperellumupm1 AT ramlinorhayati insilicocharacterizationofglycosylhydrolasefamily1bglucosidasefromtrichodermaasperellumupm1 |