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Brick-CFCMC: Open Source Software for Monte Carlo Simulations of Phase and Reaction Equilibria Using the Continuous Fractional Component Method
[Image: see text] We present a new molecular simulation code, Brick-CFCMC, for performing Monte Carlo simulations using state-of-the-art simulation techniques. The Continuous Fractional Component (CFC) method is implemented for simulations in the NVT/NPT ensembles, the Gibbs Ensemble, the Grand-Cano...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312392/ https://www.ncbi.nlm.nih.gov/pubmed/32275829 http://dx.doi.org/10.1021/acs.jcim.0c00334 |
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author | Hens, Remco Rahbari, Ahmadreza Caro-Ortiz, Sebastián Dawass, Noura Erdős, Máté Poursaeidesfahani, Ali Salehi, Hirad S. Celebi, Alper T. Ramdin, Mahinder Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. |
author_facet | Hens, Remco Rahbari, Ahmadreza Caro-Ortiz, Sebastián Dawass, Noura Erdős, Máté Poursaeidesfahani, Ali Salehi, Hirad S. Celebi, Alper T. Ramdin, Mahinder Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. |
author_sort | Hens, Remco |
collection | PubMed |
description | [Image: see text] We present a new molecular simulation code, Brick-CFCMC, for performing Monte Carlo simulations using state-of-the-art simulation techniques. The Continuous Fractional Component (CFC) method is implemented for simulations in the NVT/NPT ensembles, the Gibbs Ensemble, the Grand-Canonical Ensemble, and the Reaction Ensemble. Molecule transfers are facilitated by the use of fractional molecules which significantly improve the efficiency of the simulations. With the CFC method, one can obtain phase equilibria and properties such as chemical potentials and partial molar enthalpies/volumes directly from a single simulation. It is possible to combine trial moves from different ensembles. This enables simulations of phase equilibria in a system where also a chemical reaction takes place. We demonstrate the applicability of our software by investigating the esterification of methanol with acetic acid in a two-phase system. |
format | Online Article Text |
id | pubmed-7312392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-73123922020-06-24 Brick-CFCMC: Open Source Software for Monte Carlo Simulations of Phase and Reaction Equilibria Using the Continuous Fractional Component Method Hens, Remco Rahbari, Ahmadreza Caro-Ortiz, Sebastián Dawass, Noura Erdős, Máté Poursaeidesfahani, Ali Salehi, Hirad S. Celebi, Alper T. Ramdin, Mahinder Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. J Chem Inf Model [Image: see text] We present a new molecular simulation code, Brick-CFCMC, for performing Monte Carlo simulations using state-of-the-art simulation techniques. The Continuous Fractional Component (CFC) method is implemented for simulations in the NVT/NPT ensembles, the Gibbs Ensemble, the Grand-Canonical Ensemble, and the Reaction Ensemble. Molecule transfers are facilitated by the use of fractional molecules which significantly improve the efficiency of the simulations. With the CFC method, one can obtain phase equilibria and properties such as chemical potentials and partial molar enthalpies/volumes directly from a single simulation. It is possible to combine trial moves from different ensembles. This enables simulations of phase equilibria in a system where also a chemical reaction takes place. We demonstrate the applicability of our software by investigating the esterification of methanol with acetic acid in a two-phase system. American Chemical Society 2020-04-13 2020-06-22 /pmc/articles/PMC7312392/ /pubmed/32275829 http://dx.doi.org/10.1021/acs.jcim.0c00334 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Hens, Remco Rahbari, Ahmadreza Caro-Ortiz, Sebastián Dawass, Noura Erdős, Máté Poursaeidesfahani, Ali Salehi, Hirad S. Celebi, Alper T. Ramdin, Mahinder Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. Brick-CFCMC: Open Source Software for Monte Carlo Simulations of Phase and Reaction Equilibria Using the Continuous Fractional Component Method |
title | Brick-CFCMC: Open Source Software for Monte Carlo
Simulations of Phase and Reaction Equilibria Using the Continuous
Fractional Component Method |
title_full | Brick-CFCMC: Open Source Software for Monte Carlo
Simulations of Phase and Reaction Equilibria Using the Continuous
Fractional Component Method |
title_fullStr | Brick-CFCMC: Open Source Software for Monte Carlo
Simulations of Phase and Reaction Equilibria Using the Continuous
Fractional Component Method |
title_full_unstemmed | Brick-CFCMC: Open Source Software for Monte Carlo
Simulations of Phase and Reaction Equilibria Using the Continuous
Fractional Component Method |
title_short | Brick-CFCMC: Open Source Software for Monte Carlo
Simulations of Phase and Reaction Equilibria Using the Continuous
Fractional Component Method |
title_sort | brick-cfcmc: open source software for monte carlo
simulations of phase and reaction equilibria using the continuous
fractional component method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312392/ https://www.ncbi.nlm.nih.gov/pubmed/32275829 http://dx.doi.org/10.1021/acs.jcim.0c00334 |
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