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WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation
The potential barriers governing the motions of α-synuclein (αS) variants’ hydration water, especially energetics of them, is in the focus of the work. The thermodynamical approach yielded essential information about distributions and heights of the potential barriers. The proteins’ structural disor...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312601/ https://www.ncbi.nlm.nih.gov/pubmed/32503167 http://dx.doi.org/10.3390/ijms21113997 |
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author | Bokor, Mónika Tantos, Ágnes Tompa, Péter Han, Kyou-Hoon Tompa, Kálmán |
author_facet | Bokor, Mónika Tantos, Ágnes Tompa, Péter Han, Kyou-Hoon Tompa, Kálmán |
author_sort | Bokor, Mónika |
collection | PubMed |
description | The potential barriers governing the motions of α-synuclein (αS) variants’ hydration water, especially energetics of them, is in the focus of the work. The thermodynamical approach yielded essential information about distributions and heights of the potential barriers. The proteins’ structural disorder was measured by ratios of heterogeneous water-binding interfaces. They showed the αS monomers, oligomers and amyloids to possess secondary structural elements, although monomers are intrinsically disordered. Despite their disordered nature, monomers have 33% secondary structure, and therefore they are more compact than a random coil. At the lowest potential barriers with mobile hydration water, monomers are already functional, a monolayer of mobile hydration water is surrounding them. Monomers realize all possible hydrogen bonds with the solvent water. αS oligomers and amyloids have half of the mobile hydration water amount than monomers because aggregation involves less mobile hydration. The solvent-accessible surface of the oligomers is ordered or homogenous in its interactions with water to 66%. As a contrast, αS amyloids are disordered or heterogeneous to 75% of their solvent accessible surface and both wild type and A53T amyloids show identical, low-level hydration. Mobile water molecules in the first hydration shell of amyloids are the weakest bound compared to other forms. |
format | Online Article Text |
id | pubmed-7312601 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-73126012020-06-29 WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation Bokor, Mónika Tantos, Ágnes Tompa, Péter Han, Kyou-Hoon Tompa, Kálmán Int J Mol Sci Article The potential barriers governing the motions of α-synuclein (αS) variants’ hydration water, especially energetics of them, is in the focus of the work. The thermodynamical approach yielded essential information about distributions and heights of the potential barriers. The proteins’ structural disorder was measured by ratios of heterogeneous water-binding interfaces. They showed the αS monomers, oligomers and amyloids to possess secondary structural elements, although monomers are intrinsically disordered. Despite their disordered nature, monomers have 33% secondary structure, and therefore they are more compact than a random coil. At the lowest potential barriers with mobile hydration water, monomers are already functional, a monolayer of mobile hydration water is surrounding them. Monomers realize all possible hydrogen bonds with the solvent water. αS oligomers and amyloids have half of the mobile hydration water amount than monomers because aggregation involves less mobile hydration. The solvent-accessible surface of the oligomers is ordered or homogenous in its interactions with water to 66%. As a contrast, αS amyloids are disordered or heterogeneous to 75% of their solvent accessible surface and both wild type and A53T amyloids show identical, low-level hydration. Mobile water molecules in the first hydration shell of amyloids are the weakest bound compared to other forms. MDPI 2020-06-03 /pmc/articles/PMC7312601/ /pubmed/32503167 http://dx.doi.org/10.3390/ijms21113997 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Bokor, Mónika Tantos, Ágnes Tompa, Péter Han, Kyou-Hoon Tompa, Kálmán WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation |
title | WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation |
title_full | WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation |
title_fullStr | WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation |
title_full_unstemmed | WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation |
title_short | WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation |
title_sort | wt and a53t α-synuclein systems: melting diagram and its new interpretation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312601/ https://www.ncbi.nlm.nih.gov/pubmed/32503167 http://dx.doi.org/10.3390/ijms21113997 |
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