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Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification
Analyzing polysomnography (PSG) is an effective method for evaluating sleep health; however, the sleep stage scoring required for PSG analysis is a time-consuming effort for an experienced medical expert. When scoring sleep epochs, experts pay attention to find specific signal characteristics (e.g.,...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7313068/ https://www.ncbi.nlm.nih.gov/pubmed/32532084 http://dx.doi.org/10.3390/ijerph17114152 |
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author | Zhu, Tianqi Luo, Wei Yu, Feng |
author_facet | Zhu, Tianqi Luo, Wei Yu, Feng |
author_sort | Zhu, Tianqi |
collection | PubMed |
description | Analyzing polysomnography (PSG) is an effective method for evaluating sleep health; however, the sleep stage scoring required for PSG analysis is a time-consuming effort for an experienced medical expert. When scoring sleep epochs, experts pay attention to find specific signal characteristics (e.g., K-complexes and spindles), and sometimes need to integrate information from preceding and subsequent epochs in order to make a decision. To imitate this process and to build a more interpretable deep learning model, we propose a neural network based on a convolutional network (CNN) and attention mechanism to perform automatic sleep staging. The CNN learns local signal characteristics, and the attention mechanism excels in learning inter- and intra-epoch features. In experiments on the public sleep-edf and sleep-edfx databases with different training and testing set partitioning methods, our model achieved overall accuracies of 93.7% and 82.8%, and macro-average F1-scores of 84.5 and 77.8, respectively, outperforming recently reported machine learning-based methods. |
format | Online Article Text |
id | pubmed-7313068 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-73130682020-06-29 Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification Zhu, Tianqi Luo, Wei Yu, Feng Int J Environ Res Public Health Article Analyzing polysomnography (PSG) is an effective method for evaluating sleep health; however, the sleep stage scoring required for PSG analysis is a time-consuming effort for an experienced medical expert. When scoring sleep epochs, experts pay attention to find specific signal characteristics (e.g., K-complexes and spindles), and sometimes need to integrate information from preceding and subsequent epochs in order to make a decision. To imitate this process and to build a more interpretable deep learning model, we propose a neural network based on a convolutional network (CNN) and attention mechanism to perform automatic sleep staging. The CNN learns local signal characteristics, and the attention mechanism excels in learning inter- and intra-epoch features. In experiments on the public sleep-edf and sleep-edfx databases with different training and testing set partitioning methods, our model achieved overall accuracies of 93.7% and 82.8%, and macro-average F1-scores of 84.5 and 77.8, respectively, outperforming recently reported machine learning-based methods. MDPI 2020-06-10 2020-06 /pmc/articles/PMC7313068/ /pubmed/32532084 http://dx.doi.org/10.3390/ijerph17114152 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zhu, Tianqi Luo, Wei Yu, Feng Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification |
title | Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification |
title_full | Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification |
title_fullStr | Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification |
title_full_unstemmed | Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification |
title_short | Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification |
title_sort | convolution- and attention-based neural network for automated sleep stage classification |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7313068/ https://www.ncbi.nlm.nih.gov/pubmed/32532084 http://dx.doi.org/10.3390/ijerph17114152 |
work_keys_str_mv | AT zhutianqi convolutionandattentionbasedneuralnetworkforautomatedsleepstageclassification AT luowei convolutionandattentionbasedneuralnetworkforautomatedsleepstageclassification AT yufeng convolutionandattentionbasedneuralnetworkforautomatedsleepstageclassification |