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Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification

Analyzing polysomnography (PSG) is an effective method for evaluating sleep health; however, the sleep stage scoring required for PSG analysis is a time-consuming effort for an experienced medical expert. When scoring sleep epochs, experts pay attention to find specific signal characteristics (e.g.,...

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Autores principales: Zhu, Tianqi, Luo, Wei, Yu, Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7313068/
https://www.ncbi.nlm.nih.gov/pubmed/32532084
http://dx.doi.org/10.3390/ijerph17114152
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author Zhu, Tianqi
Luo, Wei
Yu, Feng
author_facet Zhu, Tianqi
Luo, Wei
Yu, Feng
author_sort Zhu, Tianqi
collection PubMed
description Analyzing polysomnography (PSG) is an effective method for evaluating sleep health; however, the sleep stage scoring required for PSG analysis is a time-consuming effort for an experienced medical expert. When scoring sleep epochs, experts pay attention to find specific signal characteristics (e.g., K-complexes and spindles), and sometimes need to integrate information from preceding and subsequent epochs in order to make a decision. To imitate this process and to build a more interpretable deep learning model, we propose a neural network based on a convolutional network (CNN) and attention mechanism to perform automatic sleep staging. The CNN learns local signal characteristics, and the attention mechanism excels in learning inter- and intra-epoch features. In experiments on the public sleep-edf and sleep-edfx databases with different training and testing set partitioning methods, our model achieved overall accuracies of 93.7% and 82.8%, and macro-average F1-scores of 84.5 and 77.8, respectively, outperforming recently reported machine learning-based methods.
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spelling pubmed-73130682020-06-29 Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification Zhu, Tianqi Luo, Wei Yu, Feng Int J Environ Res Public Health Article Analyzing polysomnography (PSG) is an effective method for evaluating sleep health; however, the sleep stage scoring required for PSG analysis is a time-consuming effort for an experienced medical expert. When scoring sleep epochs, experts pay attention to find specific signal characteristics (e.g., K-complexes and spindles), and sometimes need to integrate information from preceding and subsequent epochs in order to make a decision. To imitate this process and to build a more interpretable deep learning model, we propose a neural network based on a convolutional network (CNN) and attention mechanism to perform automatic sleep staging. The CNN learns local signal characteristics, and the attention mechanism excels in learning inter- and intra-epoch features. In experiments on the public sleep-edf and sleep-edfx databases with different training and testing set partitioning methods, our model achieved overall accuracies of 93.7% and 82.8%, and macro-average F1-scores of 84.5 and 77.8, respectively, outperforming recently reported machine learning-based methods. MDPI 2020-06-10 2020-06 /pmc/articles/PMC7313068/ /pubmed/32532084 http://dx.doi.org/10.3390/ijerph17114152 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhu, Tianqi
Luo, Wei
Yu, Feng
Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification
title Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification
title_full Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification
title_fullStr Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification
title_full_unstemmed Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification
title_short Convolution- and Attention-Based Neural Network for Automated Sleep Stage Classification
title_sort convolution- and attention-based neural network for automated sleep stage classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7313068/
https://www.ncbi.nlm.nih.gov/pubmed/32532084
http://dx.doi.org/10.3390/ijerph17114152
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