Cargando…

Understanding the early cold response mechanism in IR64 indica rice variety through comparative transcriptome analysis

BACKGROUND: Cellular reprogramming in response to environmental stress involves alteration of gene expression, changes in the protein and metabolite profile for ensuring better stress management in plants. Similar to other plant species originating in tropical and sub-tropical areas, indica rice is...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dasgupta, Pratiti, Das, Abhishek, Datta, Sambit, Banerjee, Ishani, Tripathy, Sucheta, Chaudhuri, Shubho
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2020
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7315535/ https://www.ncbi.nlm.nih.gov/pubmed/32580699 http://dx.doi.org/10.1186/s12864-020-06841-2

Ejemplares similares

De novo Genome Assembly of the indica Rice Variety IR64 Using Linked-Read Sequencing and Nanopore Sequencing
por: Tanaka, Tsuyoshi, et al.
Publicado: (2020)

Characterization of near-isogenic lines carrying QTL for high spikelet number with the genetic background of an indica rice variety IR64 (Oryza sativa L.)
por: Fujita, Daisuke, et al.
Publicado: (2012)

Large-scale production and evaluation of marker-free indica rice IR64 expressing phytoferritin genes
por: Oliva, Norman, et al.
Publicado: (2013)

Detection of heading date QTLs in advanced-backcross populations of an elite indica rice cultivar, IR64
por: Nonoue, Yasunori, et al.
Publicado: (2019)

Development and evaluation of pyramiding lines carrying early or late heading QTLs in the indica rice cultivar ‘IR64’
por: Takai, Toshiyuki, et al.
Publicado: (2021)

Mapping and characterization of a quantitative trait locus resistance to the brown planthopper in the rice variety IR64
por: Yang, Meng, et al.
Publicado: (2019)

A comprehensive study of the hormetic influence of biosynthesized AgNPs on regenerating rice calli of indica cv. IR64
por: Manickavasagam, Markandan, et al.
Publicado: (2019)

IR64: a high-quality and high-yielding mega variety
por: Mackill, David J., et al.
Publicado: (2018)

Comparative proteomic analysis of indica and japonica rice varieties
por: Yang, Yanhua, et al.
Publicado: (2014)

Genetic, Physiological, and Gene Expression Analyses Reveal That Multiple QTL Enhance Yield of Rice Mega-Variety IR64 under Drought
por: Swamy B. P., Mallikarjuna, et al.
Publicado: (2013)

Selective manipulation of the inositol metabolic pathway for induction of salt-tolerance in indica rice variety
por: Mukherjee, Rajeswari, et al.
Publicado: (2019)

Variation in seed longevity among diverse Indica rice varieties
por: Lee, Jae-Sung, et al.
Publicado: (2019)

Comparative transcriptome analysis of the mechanism difference in heat stress response between indica rice cultivar “IR64” and japonica cultivar “Koshihikari” at the seedling stage
por: Wang, Yingfeng, et al.
Publicado: (2023)

Effect of antibiotics on callus regeneration during transformation of IR 64 rice
por: Tran, Thanh Ngoc, et al.
Publicado: (2015)

Transcriptomic Analysis for Indica and Japonica Rice Varieties under Aluminum Toxicity
por: Zhang, Peng, et al.
Publicado: (2019)

Genetic Diversity Assessment of Rarely Cultivated Traditional Indica Rice (Oryza sativa L.) Varieties
por: Rekha, T., et al.
Publicado: (2011)

Impact of Seed Origin and Genetic Drift of Improved Rice Variety IR841 in Benin
por: Sedah, Paulin, et al.
Publicado: (2023)

Transcriptional response of rice flag leaves to restricted external phosphorus supply during grain filling in rice cv. IR64
por: Jeong, Kwanho, et al.
Publicado: (2018)

Changes in Rice Grain Quality of Indica and Japonica Type Varieties Released in China from 2000 to 2014
por: Feng, Fan, et al.
Publicado: (2017)

Genetic transformation of indica rice varieties involving Am-SOD gene for improved abiotic stress tolerance
por: Samara Shekar Reddy, S., et al.
Publicado: (2019)

Validating a segment on chromosome 7 of japonica for establishing low-cadmium accumulating indica rice variety
por: Wang, Kai, et al.
Publicado: (2021)

Physiological mechanisms contributing to the QTL-combination effects on improved performance of IR64 rice NILs under drought
por: Henry, Amelia, et al.
Publicado: (2015)

QTL mapping for tolerance to anaerobic germination in rice from IR64 and the aus landrace Kharsu 80A
por: Baltazar, Miriam D., et al.
Publicado: (2019)

Mature seed-derived callus of the model indica rice variety Kasalath is highly competent in Agrobacterium-mediated transformation
por: Saika, Hiroaki, et al.
Publicado: (2010)

Whole genome sequencing and analysis of Swarna, a widely cultivated indica rice variety with low glycemic index
por: Rathinasabapathi, Pasupathi, et al.
Publicado: (2015)

Overexpression of ABA Receptor PYL10 Gene Confers Drought and Cold Tolerance to Indica Rice
por: Verma, Rakesh Kumar, et al.
Publicado: (2019)

Transcriptomic Profiling of Cold Stress-Induced Differentially Expressed Genes in Seedling Stage of Indica Rice
por: Yan, Tao, et al.
Publicado: (2023)

Detection of novel loci involved in non-seed-shattering behaviour of an indica rice cultivar, Oryza sativa IR36
por: Sugiyama, Shohei, et al.
Publicado: (2023)

Differential Acetylation of Histone H3 at the Regulatory Region of OsDREB1b Promoter Facilitates Chromatin Remodelling and Transcription Activation during Cold Stress
por: Roy, Dipan, et al.
Publicado: (2014)

Identification of QTLs for rice grain size and weight by high-throughput SNP markers in the IR64 x Sadri population
por: Aslam, Kashif, et al.
Publicado: (2022)

The qSAC3 locus from indica rice effectively increases amylose content under a variety of conditions
por: Zhang, Hua, et al.
Publicado: (2019)

Development of a Temperate Climate-Adapted indica Multi-stress Tolerant Rice Variety by Pyramiding Quantitative Trait Loci
por: Shin, Na-Hyun, et al.
Publicado: (2022)

Correction: Detection of novel loci involved in non-seed-shattering behaviour of an indica rice cultivar, Oryza sativa IR36
por: Sugiyama, Shohei, et al.
Publicado: (2023)

Substitution mapping and characterization of brown planthopper resistance genes from indica rice variety, ‘PTB33’ (Oryza sativa L.)
por: Nguyen, Cuong Dinh, et al.
Publicado: (2021)

Development of Cytoplasmic Male Sterile IR24 and IR64 Using CW-CMS/Rf17 System
por: Toriyama, Kinya, et al.
Publicado: (2016)

Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background
por: Zhang, Fan, et al.
Publicado: (2012)

Comparative transcriptome analysis of coleorhiza development in japonica and Indica rice
por: Song, Tao, et al.
Publicado: (2021)

Finding the superior allele of japonica-type for increasing stem lodging resistance in indica rice varieties using chromosome segment substitution lines
por: Mulsanti, Indria Wahyu, et al.
Publicado: (2018)

eRice: a refined epigenomic platform for japonica and indica rice
por: Zhang, Pingxian, et al.
Publicado: (2020)

The Next Generation of Rice: Inter-Subspecific Indica-Japonica Hybrid Rice
por: Zhang, Guiquan
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_uvgu8l9qjmnbt92j8v0ukf32ce