Cargando…

Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor

[Image: see text] Proton-coupled electron transfer (PCET) from tyrosine produces a neutral tyrosyl radical (Y(•)) that is vital to many catalytic redox reactions. To better understand how the protein environment influences the PCET properties of tyrosine, we have studied the radical formation behavi...

Descripción completa

Detalles Bibliográficos
Autores principales: Nilsen-Moe, Astrid, Reinhardt, Clorice R., Glover, Starla D., Liang, Li, Hammes-Schiffer, Sharon, Hammarström, Leif, Tommos, Cecilia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7315633/
https://www.ncbi.nlm.nih.gov/pubmed/32479070
http://dx.doi.org/10.1021/jacs.0c04655
_version_ 1783550296294686720
author Nilsen-Moe, Astrid
Reinhardt, Clorice R.
Glover, Starla D.
Liang, Li
Hammes-Schiffer, Sharon
Hammarström, Leif
Tommos, Cecilia
author_facet Nilsen-Moe, Astrid
Reinhardt, Clorice R.
Glover, Starla D.
Liang, Li
Hammes-Schiffer, Sharon
Hammarström, Leif
Tommos, Cecilia
author_sort Nilsen-Moe, Astrid
collection PubMed
description [Image: see text] Proton-coupled electron transfer (PCET) from tyrosine produces a neutral tyrosyl radical (Y(•)) that is vital to many catalytic redox reactions. To better understand how the protein environment influences the PCET properties of tyrosine, we have studied the radical formation behavior of Y(32) in the α(3)Y model protein. The previously solved α(3)Y solution NMR structure shows that Y(32) is sequestered ∼7.7 ± 0.3 Å below the protein surface without any primary proton acceptors nearby. Here we present transient absorption kinetic data and molecular dynamics (MD) simulations to resolve the PCET mechanism associated with Y(32) oxidation. Y(32)(•) was generated in a bimolecular reaction with [Ru(bpy)(3)](3+) formed by flash photolysis. At pH > 8, the rate constant of Y(32)(•) formation (k(PCET)) increases by one order of magnitude per pH unit, corresponding to a proton-first mechanism via tyrosinate (PTET). At lower pH < 7.5, the pH dependence is weak and shows a previously measured KIE ≈ 2.5, which best fits a concerted mechanism. k(PCET) is independent of phosphate buffer concentration at pH 6.5. This provides clear evidence that phosphate buffer is not the primary proton acceptor. MD simulations show that one to two water molecules can enter the hydrophobic cavity of α(3)Y and hydrogen bond to Y(32), as well as the possibility of hydrogen-bonding interactions between Y(32) and E(13), through structural fluctuations that reorient surrounding side chains. Our results illustrate how protein conformational motions can influence the redox reactivity of a tyrosine residue and how PCET mechanisms can be tuned by changing the pH even when the PCET occurs within the interior of a protein.
format Online
Article
Text
id pubmed-7315633
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-73156332020-06-26 Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor Nilsen-Moe, Astrid Reinhardt, Clorice R. Glover, Starla D. Liang, Li Hammes-Schiffer, Sharon Hammarström, Leif Tommos, Cecilia J Am Chem Soc [Image: see text] Proton-coupled electron transfer (PCET) from tyrosine produces a neutral tyrosyl radical (Y(•)) that is vital to many catalytic redox reactions. To better understand how the protein environment influences the PCET properties of tyrosine, we have studied the radical formation behavior of Y(32) in the α(3)Y model protein. The previously solved α(3)Y solution NMR structure shows that Y(32) is sequestered ∼7.7 ± 0.3 Å below the protein surface without any primary proton acceptors nearby. Here we present transient absorption kinetic data and molecular dynamics (MD) simulations to resolve the PCET mechanism associated with Y(32) oxidation. Y(32)(•) was generated in a bimolecular reaction with [Ru(bpy)(3)](3+) formed by flash photolysis. At pH > 8, the rate constant of Y(32)(•) formation (k(PCET)) increases by one order of magnitude per pH unit, corresponding to a proton-first mechanism via tyrosinate (PTET). At lower pH < 7.5, the pH dependence is weak and shows a previously measured KIE ≈ 2.5, which best fits a concerted mechanism. k(PCET) is independent of phosphate buffer concentration at pH 6.5. This provides clear evidence that phosphate buffer is not the primary proton acceptor. MD simulations show that one to two water molecules can enter the hydrophobic cavity of α(3)Y and hydrogen bond to Y(32), as well as the possibility of hydrogen-bonding interactions between Y(32) and E(13), through structural fluctuations that reorient surrounding side chains. Our results illustrate how protein conformational motions can influence the redox reactivity of a tyrosine residue and how PCET mechanisms can be tuned by changing the pH even when the PCET occurs within the interior of a protein. American Chemical Society 2020-06-01 2020-07-01 /pmc/articles/PMC7315633/ /pubmed/32479070 http://dx.doi.org/10.1021/jacs.0c04655 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Nilsen-Moe, Astrid
Reinhardt, Clorice R.
Glover, Starla D.
Liang, Li
Hammes-Schiffer, Sharon
Hammarström, Leif
Tommos, Cecilia
Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor
title Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor
title_full Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor
title_fullStr Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor
title_full_unstemmed Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor
title_short Proton-Coupled Electron Transfer from Tyrosine in the Interior of a de novo Protein: Mechanisms and Primary Proton Acceptor
title_sort proton-coupled electron transfer from tyrosine in the interior of a de novo protein: mechanisms and primary proton acceptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7315633/
https://www.ncbi.nlm.nih.gov/pubmed/32479070
http://dx.doi.org/10.1021/jacs.0c04655
work_keys_str_mv AT nilsenmoeastrid protoncoupledelectrontransferfromtyrosineintheinteriorofadenovoproteinmechanismsandprimaryprotonacceptor
AT reinhardtcloricer protoncoupledelectrontransferfromtyrosineintheinteriorofadenovoproteinmechanismsandprimaryprotonacceptor
AT gloverstarlad protoncoupledelectrontransferfromtyrosineintheinteriorofadenovoproteinmechanismsandprimaryprotonacceptor
AT liangli protoncoupledelectrontransferfromtyrosineintheinteriorofadenovoproteinmechanismsandprimaryprotonacceptor
AT hammesschiffersharon protoncoupledelectrontransferfromtyrosineintheinteriorofadenovoproteinmechanismsandprimaryprotonacceptor
AT hammarstromleif protoncoupledelectrontransferfromtyrosineintheinteriorofadenovoproteinmechanismsandprimaryprotonacceptor
AT tommoscecilia protoncoupledelectrontransferfromtyrosineintheinteriorofadenovoproteinmechanismsandprimaryprotonacceptor