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Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition

Multi‐channel phased receive arrays have been widely adopted for magnetic resonance imaging (MRI) and spectroscopy (MRS). An important step in the use of receive arrays for MRS is the combination of spectra collected from individual coil channels. The goal of this work was to implement an improved s...

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Autores principales: Sung, Dongsuk, Risk, Benjamin B., Owusu‐Ansah, Maame, Zhong, Xiaodong, Mao, Hui, Fleischer, Candace C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7317403/
https://www.ncbi.nlm.nih.gov/pubmed/32249522
http://dx.doi.org/10.1002/nbm.4297
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author Sung, Dongsuk
Risk, Benjamin B.
Owusu‐Ansah, Maame
Zhong, Xiaodong
Mao, Hui
Fleischer, Candace C.
author_facet Sung, Dongsuk
Risk, Benjamin B.
Owusu‐Ansah, Maame
Zhong, Xiaodong
Mao, Hui
Fleischer, Candace C.
author_sort Sung, Dongsuk
collection PubMed
description Multi‐channel phased receive arrays have been widely adopted for magnetic resonance imaging (MRI) and spectroscopy (MRS). An important step in the use of receive arrays for MRS is the combination of spectra collected from individual coil channels. The goal of this work was to implement an improved strategy termed OpTIMUS (i.e., optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition) for combining data from individual channels. OpTIMUS relies on spectral windowing coupled with a rank‐R decomposition to calculate the optimal coil channel weights. MRS data acquired from a brain spectroscopy phantom and 11 healthy volunteers were first processed using a whitening transformation to remove correlated noise. Whitened spectra were then iteratively windowed or truncated, followed by a rank‐R singular value decomposition (SVD) to empirically determine the coil channel weights. Spectra combined using the vendor‐supplied method, signal/noise(2) weighting, previously reported whitened SVD (rank‐1), and OpTIMUS were evaluated using the signal‐to‐noise ratio (SNR). Significant increases in SNR ranging from 6% to 33% (P ≤ 0.05) were observed for brain MRS data combined with OpTIMUS compared with the three other combination algorithms. The assumption that a rank‐1 SVD maximizes SNR was tested empirically, and a higher rank‐R decomposition, combined with spectral windowing prior to SVD, resulted in increased SNR.
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spelling pubmed-73174032020-06-30 Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition Sung, Dongsuk Risk, Benjamin B. Owusu‐Ansah, Maame Zhong, Xiaodong Mao, Hui Fleischer, Candace C. NMR Biomed Research Articles Multi‐channel phased receive arrays have been widely adopted for magnetic resonance imaging (MRI) and spectroscopy (MRS). An important step in the use of receive arrays for MRS is the combination of spectra collected from individual coil channels. The goal of this work was to implement an improved strategy termed OpTIMUS (i.e., optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition) for combining data from individual channels. OpTIMUS relies on spectral windowing coupled with a rank‐R decomposition to calculate the optimal coil channel weights. MRS data acquired from a brain spectroscopy phantom and 11 healthy volunteers were first processed using a whitening transformation to remove correlated noise. Whitened spectra were then iteratively windowed or truncated, followed by a rank‐R singular value decomposition (SVD) to empirically determine the coil channel weights. Spectra combined using the vendor‐supplied method, signal/noise(2) weighting, previously reported whitened SVD (rank‐1), and OpTIMUS were evaluated using the signal‐to‐noise ratio (SNR). Significant increases in SNR ranging from 6% to 33% (P ≤ 0.05) were observed for brain MRS data combined with OpTIMUS compared with the three other combination algorithms. The assumption that a rank‐1 SVD maximizes SNR was tested empirically, and a higher rank‐R decomposition, combined with spectral windowing prior to SVD, resulted in increased SNR. John Wiley and Sons Inc. 2020-04-06 2020-07 /pmc/articles/PMC7317403/ /pubmed/32249522 http://dx.doi.org/10.1002/nbm.4297 Text en © 2020 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research Articles
Sung, Dongsuk
Risk, Benjamin B.
Owusu‐Ansah, Maame
Zhong, Xiaodong
Mao, Hui
Fleischer, Candace C.
Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition
title Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition
title_full Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition
title_fullStr Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition
title_full_unstemmed Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition
title_short Optimized truncation to integrate multi‐channel MRS data using rank‐R singular value decomposition
title_sort optimized truncation to integrate multi‐channel mrs data using rank‐r singular value decomposition
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7317403/
https://www.ncbi.nlm.nih.gov/pubmed/32249522
http://dx.doi.org/10.1002/nbm.4297
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