Cargando…

NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets

With the development of high throughput technologies, there are more and more protein–protein interaction (PPI) networks available, which provide a need for efficient computational tools for network alignment. Network alignment is widely used to predict functions of certain proteins, identify conser...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhu, Lijuan, Zhang, Ju, Zhang, Yi, Lang, Jidong, Xiang, Ju, Bai, Xiaogang, Yan, Na, Tian, Geng, Zhang, Huajun, Yang, Jialiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Bioengineering and Biotechnology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7318716/ https://www.ncbi.nlm.nih.gov/pubmed/32637398 http://dx.doi.org/10.3389/fbioe.2020.00547

Ejemplares similares

Editorial: Bioinformatics analysis tools for nanopore sequencing and applications
por: Lang, Jidong, et al.
Publicado: (2023)

TOOme: A Novel Computational Framework to Infer Cancer Tissue-of-Origin by Integrating Both Gene Mutation and Expression
por: He, Binsheng, et al.
Publicado: (2020)

Assessing the Impact of Data Preprocessing on Analyzing Next Generation Sequencing Data
por: He, Binsheng, et al.
Publicado: (2020)

A Neural Network Framework for Predicting the Tissue-of-Origin of 15 Common Cancer Types Based on RNA-Seq Data
por: He, Binsheng, et al.
Publicado: (2020)

SPECTRA: An Integrated Knowledge Base for Comparing Tissue and Tumor-Specific PPI Networks in Human
por: Micale, Giovanni, et al.
Publicado: (2015)

Optimal Network Alignment with Graphlet Degree Vectors
por: Milenković, Tijana, et al.
Publicado: (2010)

L-GRAAL: Lagrangian graphlet-based network aligner
por: Malod-Dognin, Noël, et al.
Publicado: (2015)

A New Method for CTC Images Recognition Based on Machine Learning
por: He, Binsheng, et al.
Publicado: (2020)

3D-Printed PCL/PPy Conductive Scaffolds as Three-Dimensional Porous Nerve Guide Conduits (NGCs) for Peripheral Nerve Injury Repair
por: Vijayavenkataraman, Sanjairaj, et al.
Publicado: (2019)

Precision enhanced alignment bonding technique with sacrificial strategy
por: Li, Qian, et al.
Publicado: (2023)

PPy@Fe(3)O(4) nanoparticles inhibit the proliferation and metastasis of CRC via suppressing the NF-κB signaling pathway and promoting ferroptosis
por: Yu, Zhilong, et al.
Publicado: (2022)

Corrigendum: PPy@Fe(3)O(4) nanoparticles inhibit the proliferation and metastasis of CRC via suppressing the NF-κB signaling pathway and promoting ferroptosis
por: Yu, Zhilong, et al.
Publicado: (2023)

From homogeneous to heterogeneous network alignment via colored graphlets
por: Gu, Shawn, et al.
Publicado: (2018)

Shape-memory responses compared between random and aligned electrospun fibrous mats
por: Wang, Xianliu, et al.
Publicado: (2023)

Rapid Fabrication of Cell-Laden Microfibers for Construction of Aligned Biomimetic Tissue
por: Lu, Bingchuan, et al.
Publicado: (2021)

An Aligned Patterned Biomimetic Elastic Membrane Has a Potential as Vascular Tissue Engineering Material
por: Tan, Juanjuan, et al.
Publicado: (2020)

Corrigendum: Yu et al. PPy@Fe(3)O(4) nanoparticles inhibit the proliferation and metastasis of CRC via suppressing the NF-κB signaling pathway and promoting ferroptosis
por: Yu, Zhilong, et al.
Publicado: (2022)

Identifying Small Molecule-miRNA Associations Based on Credible Negative Sample Selection and Random Walk
por: Liu, Fuxing, et al.
Publicado: (2020)

A Deep Learning Framework to Predict Tumor Tissue-of-Origin Based on Copy Number Alteration
por: Liang, Ying, et al.
Publicado: (2020)

Mechanical alignment tolerance of a cruciate-retaining knee prosthesis under gait loading—A finite element analysis
por: Luan, Yichao, et al.
Publicado: (2023)

Graphlets in Multiplex Networks
por: Dimitrova, Tamarа, et al.
Publicado: (2020)

Biomimetic Scaffold with Aligned Microporosity Designed for Dentin Regeneration
por: Panseri, Silvia, et al.
Publicado: (2016)

Restoration of Joint Inclination in Total Knee Arthroplasty Offers Little Improvement in Joint Kinematics in Neutrally Aligned Extremities
por: Wang, Zhi-Wei, et al.
Publicado: (2021)

Intraoperative sensor technology quantifies inter-prosthesis pressure for predicting lower limb alignment after Oxford unicompartmental knee arthroplasty
por: Ge, Juncheng, et al.
Publicado: (2023)

Advances in dendritic cell targeting nano-delivery systems for induction of immune tolerance
por: Lin, Guojiao, et al.
Publicado: (2023)

Subject-Specific Alignment and Mass Distribution in Musculoskeletal Models of the Lumbar Spine
por: Fasser , Marie-Rosa, et al.
Publicado: (2021)

The Effect of Seat Back Inclination on Spinal Alignment in Automotive Seating Postures
por: Sato, Fusako, et al.
Publicado: (2021)

A comparative analysis of using cage acrossing the vertebral ring apophysis in normal and osteoporotic models under endplate injury: a finite element analysis
por: Wang, Jian, et al.
Publicado: (2023)

Electrospun aligned poly(ε-caprolactone) nanofiber yarns guiding 3D organization of tendon stem/progenitor cells in tenogenic differentiation and tendon repair
por: Yang, Qiao, et al.
Publicado: (2022)

Tight junction disruption through activation of the PI3K/AKT pathways in the skin contributes to blister fluid formation after severe tibial plateau fracture
por: Guo, Jialiang, et al.
Publicado: (2022)

Design and Application in Delivery System of Intranasal Antidepressants
por: Xu, Jingying, et al.
Publicado: (2020)

Mimicking Natural Microenvironments: Design of 3D-Aligned Hybrid Scaffold for Dentin Regeneration
por: Campodoni, Elisabetta, et al.
Publicado: (2020)

Graphlet characteristics in directed networks
por: Trpevski, Igor, et al.
Publicado: (2016)

Functionalization of Electrospun Nanofibers and Fiber Alignment Enhance Neural Stem Cell Proliferation and Neuronal Differentiation
por: Amores de Sousa, Miriam C., et al.
Publicado: (2020)

Quantifying Breast Cancer-Driven Fiber Alignment and Collagen Deposition in Primary Human Breast Tissue
por: Gurrala, Rakesh, et al.
Publicado: (2021)

Biomechanical Effect of Coronal Alignment and Ligament Laxity in Total Knee Arthroplasty: A Simulation Study
por: Ro, Jaehun, et al.
Publicado: (2022)

Expanding the pH range of glutamate decarboxylase from L. pltarum LC84 by site-directed mutagenesis
por: Yang, Lijuan, et al.
Publicado: (2023)

Comparative study of alginate and type I collagen as biomaterials for cartilage stem/progenitor cells to construct tissue-engineered cartilage in vivo
por: Zhang, Xiaodie, et al.
Publicado: (2023)

Efficient Delivery of Triptolide Plus a miR-30-5p Inhibitor Through the Use of Near Infrared Laser Responsive or CADY Modified MSNs for Efficacy in Rheumatoid Arthritis Therapeutics
por: Zhang, Xiaonan, et al.
Publicado: (2020)

KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis
por: Pornputtapong, Natapol, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_r283rj7uaf7iqlq5uglhp91ls1