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Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene

This study explores the genetic diversity and structure of Meloidogyne enterolobii in mulberry in China. The COI mitochondrial gene (mtCOI) in M.enterolobii populations in Guangdong, Guangxi, and Hunan Provinces was PCR‐amplified, sequenced, and analyzed for genetic diversity. The total number of va...

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Autores principales: Shao, Hudie, Zhang, Pan, You, Chunping, Li, Chuanren, Feng, Yan, Xie, Zhenwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319126/
https://www.ncbi.nlm.nih.gov/pubmed/32607161
http://dx.doi.org/10.1002/ece3.6282
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author Shao, Hudie
Zhang, Pan
You, Chunping
Li, Chuanren
Feng, Yan
Xie, Zhenwen
author_facet Shao, Hudie
Zhang, Pan
You, Chunping
Li, Chuanren
Feng, Yan
Xie, Zhenwen
author_sort Shao, Hudie
collection PubMed
description This study explores the genetic diversity and structure of Meloidogyne enterolobii in mulberry in China. The COI mitochondrial gene (mtCOI) in M.enterolobii populations in Guangdong, Guangxi, and Hunan Provinces was PCR‐amplified, sequenced, and analyzed for genetic diversity. The total number of variations, haplotypes (Hap), the average number of nucleotide differences (k), haplotype diversity (H), and nucleotide diversity (π) of mtCOI were 25, 11, 4.248, 0.900, and 0.00596, respectively. Insignificant differences in Fst value (0.0169) and a high level of gene flow (7.02) were detected among the 19‐mulberry root‐knot nematode populations, and high genetic variation within each population and a small genetic distance among populations were observed. Both phylogenetic analyses and network mapping of the 11 haplotypes revealed a dispersed distribution pattern of 19 mulberry root‐knot nematode populations and an absence of branches strictly corresponding to the 19 range sampling sites. The neutrality test and mismatch analysis indicated that mulberry root‐knot nematode populations experienced a population expansion in the past. The analysis of molecular variance (AMOVA) revealed that the genetic differentiation of M. enterolobii was mainly contributed by the variation within each group. No significant correlation was found between the genetic distance and geographical distance of M. enterolobii populations. The findings of this study provide a profound understanding of the M. enterolobii population and will inform the development of strategies to combat and manage root‐knot nematodes in mulberry.
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spelling pubmed-73191262020-06-29 Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene Shao, Hudie Zhang, Pan You, Chunping Li, Chuanren Feng, Yan Xie, Zhenwen Ecol Evol Original Research This study explores the genetic diversity and structure of Meloidogyne enterolobii in mulberry in China. The COI mitochondrial gene (mtCOI) in M.enterolobii populations in Guangdong, Guangxi, and Hunan Provinces was PCR‐amplified, sequenced, and analyzed for genetic diversity. The total number of variations, haplotypes (Hap), the average number of nucleotide differences (k), haplotype diversity (H), and nucleotide diversity (π) of mtCOI were 25, 11, 4.248, 0.900, and 0.00596, respectively. Insignificant differences in Fst value (0.0169) and a high level of gene flow (7.02) were detected among the 19‐mulberry root‐knot nematode populations, and high genetic variation within each population and a small genetic distance among populations were observed. Both phylogenetic analyses and network mapping of the 11 haplotypes revealed a dispersed distribution pattern of 19 mulberry root‐knot nematode populations and an absence of branches strictly corresponding to the 19 range sampling sites. The neutrality test and mismatch analysis indicated that mulberry root‐knot nematode populations experienced a population expansion in the past. The analysis of molecular variance (AMOVA) revealed that the genetic differentiation of M. enterolobii was mainly contributed by the variation within each group. No significant correlation was found between the genetic distance and geographical distance of M. enterolobii populations. The findings of this study provide a profound understanding of the M. enterolobii population and will inform the development of strategies to combat and manage root‐knot nematodes in mulberry. John Wiley and Sons Inc. 2020-06-01 /pmc/articles/PMC7319126/ /pubmed/32607161 http://dx.doi.org/10.1002/ece3.6282 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Shao, Hudie
Zhang, Pan
You, Chunping
Li, Chuanren
Feng, Yan
Xie, Zhenwen
Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene
title Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene
title_full Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene
title_fullStr Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene
title_full_unstemmed Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene
title_short Genetic Diversity of the root‐knot nematode Meloidogyne enterolobii in Mulberry Based on the Mitochondrial COI Gene
title_sort genetic diversity of the root‐knot nematode meloidogyne enterolobii in mulberry based on the mitochondrial coi gene
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319126/
https://www.ncbi.nlm.nih.gov/pubmed/32607161
http://dx.doi.org/10.1002/ece3.6282
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