Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization

The Galaxy HiCExplorer provides a web service at https://hicexplorer.usegalaxy.eu. It enables the integrative analysis of chromosome conformation by providing tools and computational resources to pre-process, analyse and visualize Hi-C, Capture Hi-C (cHi-C) and single-cell Hi-C (scHi-C) data. Since...

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Detalles Bibliográficos
Autores principales: Wolff, Joachim, Rabbani, Leily, Gilsbach, Ralf, Richard, Gautier, Manke, Thomas, Backofen, Rolf, Grüning, Björn A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Web Server Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319437/
https://www.ncbi.nlm.nih.gov/pubmed/32301980
http://dx.doi.org/10.1093/nar/gkaa220
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author Wolff, Joachim
Rabbani, Leily
Gilsbach, Ralf
Richard, Gautier
Manke, Thomas
Backofen, Rolf
Grüning, Björn A
author_facet Wolff, Joachim
Rabbani, Leily
Gilsbach, Ralf
Richard, Gautier
Manke, Thomas
Backofen, Rolf
Grüning, Björn A
author_sort Wolff, Joachim
collection PubMed
description The Galaxy HiCExplorer provides a web service at https://hicexplorer.usegalaxy.eu. It enables the integrative analysis of chromosome conformation by providing tools and computational resources to pre-process, analyse and visualize Hi-C, Capture Hi-C (cHi-C) and single-cell Hi-C (scHi-C) data. Since the last publication, Galaxy HiCExplorer has been expanded considerably with new tools to facilitate the analysis of cHi-C and to provide an in-depth analysis of Hi-C data. Moreover, it supports the analysis of scHi-C data by offering a broad range of tools. With the help of the standard graphical user interface of Galaxy, presented workflows, extensive documentation and tutorials, novices as well as Hi-C experts are supported in their Hi-C data analysis with Galaxy HiCExplorer.
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spelling pubmed-73194372020-07-01 Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization Wolff, Joachim Rabbani, Leily Gilsbach, Ralf Richard, Gautier Manke, Thomas Backofen, Rolf Grüning, Björn A Nucleic Acids Res Web Server Issue The Galaxy HiCExplorer provides a web service at https://hicexplorer.usegalaxy.eu. It enables the integrative analysis of chromosome conformation by providing tools and computational resources to pre-process, analyse and visualize Hi-C, Capture Hi-C (cHi-C) and single-cell Hi-C (scHi-C) data. Since the last publication, Galaxy HiCExplorer has been expanded considerably with new tools to facilitate the analysis of cHi-C and to provide an in-depth analysis of Hi-C data. Moreover, it supports the analysis of scHi-C data by offering a broad range of tools. With the help of the standard graphical user interface of Galaxy, presented workflows, extensive documentation and tutorials, novices as well as Hi-C experts are supported in their Hi-C data analysis with Galaxy HiCExplorer. Oxford University Press 2020-07-02 2020-04-17 /pmc/articles/PMC7319437/ /pubmed/32301980 http://dx.doi.org/10.1093/nar/gkaa220 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Server Issue
Wolff, Joachim
Rabbani, Leily
Gilsbach, Ralf
Richard, Gautier
Manke, Thomas
Backofen, Rolf
Grüning, Björn A
Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
title Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
title_full Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
title_fullStr Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
title_full_unstemmed Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
title_short Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
title_sort galaxy hicexplorer 3: a web server for reproducible hi-c, capture hi-c and single-cell hi-c data analysis, quality control and visualization
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319437/
https://www.ncbi.nlm.nih.gov/pubmed/32301980
http://dx.doi.org/10.1093/nar/gkaa220
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