Cargando…

The omics discovery REST interface

The Omics Discovery Index is an open source platform that can be used to access, discover and disseminate omics datasets. OmicsDI integrates proteomics, genomics, metabolomics, models and transcriptomics datasets. Using an efficient indexing system, OmicsDI integrates different biological entities i...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dass, Gaurhari, Vu, Manh-Tu, Xu, Pan, Audain, Enrique, Hitz, Marc-Phillip, Grüning, Björn A, Hermjakob, Henning, Perez-Riverol, Yasset
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Web Server Issue
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319562/ https://www.ncbi.nlm.nih.gov/pubmed/32374843 http://dx.doi.org/10.1093/nar/gkaa326

Ejemplares similares

Introducing the PRIDE Archive RESTful web services
por: Reisinger, Florian, et al.
Publicado: (2015)

An update on PUG-REST: RESTful interface for programmatic access to PubChem
por: Kim, Sunghwan, et al.
Publicado: (2018)

Quantifying the impact of public omics data
por: Perez-Riverol, Yasset, et al.
Publicado: (2019)

CircadiOmics: circadian omic web portal
por: Ceglia, Nicholas, et al.
Publicado: (2018)

CircadiOmics: circadian omic web portal
por: Samad, Muntaha, et al.
Publicado: (2022)

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data
por: Hernández-de-Diego, Rafael, et al.
Publicado: (2018)

OmicsAnalyst: a comprehensive web-based platform for visual analytics of multi-omics data
por: Zhou, Guangyan, et al.
Publicado: (2021)

Accurate and fast feature selection workflow for high-dimensional omics data
por: Perez-Riverol, Yasset, et al.
Publicado: (2017)

Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
por: Wolff, Joachim, et al.
Publicado: (2020)

OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics
por: Zhou, Guangyan, et al.
Publicado: (2022)

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases
por: Liu, Tianyuan, et al.
Publicado: (2022)

DynOmics: dynamics of structural proteome and beyond
por: Li, Hongchun, et al.
Publicado: (2017)

deepTools2: a next generation web server for deep-sequencing data analysis
por: Ramírez, Fidel, et al.
Publicado: (2016)

A PanorOmic view of personal cancer genomes
por: Mateo, Lidia, et al.
Publicado: (2017)

Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization
por: Wolff, Joachim, et al.
Publicado: (2018)

The RNA workbench 2.0: next generation RNA data analysis
por: Fallmann, Jörg, et al.
Publicado: (2019)

KeyPathwayMinerWeb: online multi-omics network enrichment
por: List, Markus, et al.
Publicado: (2016)

Omicseq: a web-based search engine for exploring omics datasets
por: Sun, Xiaobo, et al.
Publicado: (2017)

BIOMEX: an interactive workflow for (single cell) omics data interpretation and visualization
por: Taverna, Federico, et al.
Publicado: (2020)

ChEA3: transcription factor enrichment analysis by orthogonal omics integration
por: Keenan, Alexandra B, et al.
Publicado: (2019)

iNetModels 2.0: an interactive visualization and database of multi-omics data
por: Arif, Muhammad, et al.
Publicado: (2021)

Shiny GATOM: omics-based identification of regulated metabolic modules in atom transition networks
por: Emelianova, Mariia, et al.
Publicado: (2022)

ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks
por: Wang, Panwen, et al.
Publicado: (2015)

ExpressVis: a biologist-oriented interactive web server for exploring multi-omics data
por: Liu, Xian, et al.
Publicado: (2022)

PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data
por: Jiménez-Santos, María José, et al.
Publicado: (2023)

GIANT API: an application programming interface for functional genomics
por: Roberts, Andrew M., et al.
Publicado: (2016)

ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses
por: David, Fabrice P A, et al.
Publicado: (2020)

TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data
por: Conard, Ashley Mae, et al.
Publicado: (2021)

catRAPID omics v2.0: going deeper and wider in the prediction of protein–RNA interactions
por: Armaos, Alexandros, et al.
Publicado: (2021)

ProteinsPlus: interactive analysis of protein–ligand binding interfaces
por: Schöning-Stierand, Katrin, et al.
Publicado: (2020)

OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space
por: Zhou, Guangyan, et al.
Publicado: (2018)

Mergeomics 2.0: a web server for multi-omics data integration to elucidate disease networks and predict therapeutics
por: Ding, Jessica, et al.
Publicado: (2021)

Patscanui: an intuitive web interface for searching patterns in DNA and protein data
por: Blin, Kai, et al.
Publicado: (2018)

PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem
por: Kim, Sunghwan, et al.
Publicado: (2015)

ACFIS: a web server for fragment-based drug discovery
por: Hao, Ge-Fei, et al.
Publicado: (2016)

CausalMGM: an interactive web-based causal discovery tool
por: Ge, Xiaoyu, et al.
Publicado: (2020)

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features
por: Simovski, Boris, et al.
Publicado: (2018)

SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts
por: Gobeill, Julien, et al.
Publicado: (2020)

AlloFinder: a strategy for allosteric modulator discovery and allosterome analyses
por: Huang, Min, et al.
Publicado: (2018)

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
por: Grüning, Björn A., et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_v2da5qn5nld0a4pislaq2b905g