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AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse
With the abundant mammalian lncRNAs identified recently, a comprehensive annotation resource for these novel lncRNAs is an urgent need. Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating novel human lncRNAs on-the-fly. Here, with signific...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319567/ https://www.ncbi.nlm.nih.gov/pubmed/32406920 http://dx.doi.org/10.1093/nar/gkaa368 |
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author | Ke, Lan Yang, De-Chang Wang, Yu Ding, Yang Gao, Ge |
author_facet | Ke, Lan Yang, De-Chang Wang, Yu Ding, Yang Gao, Ge |
author_sort | Ke, Lan |
collection | PubMed |
description | With the abundant mammalian lncRNAs identified recently, a comprehensive annotation resource for these novel lncRNAs is an urgent need. Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating novel human lncRNAs on-the-fly. Here, with significant updates to multiple annotation modules, backend datasets and the code base, AnnoLnc2 continues the effort to provide the scientific community with a one-stop online portal for systematically annotating novel human and mouse lncRNAs with a comprehensive functional spectrum covering sequences, structure, expression, regulation, genetic association and evolution. In response to numerous requests from multiple users, a standalone package is also provided for large-scale offline analysis. We believe that updated AnnoLnc2 (http://annolnc.gao-lab.org/) will help both computational and bench biologists identify lncRNA functions and investigate underlying mechanisms. |
format | Online Article Text |
id | pubmed-7319567 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-73195672020-07-01 AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse Ke, Lan Yang, De-Chang Wang, Yu Ding, Yang Gao, Ge Nucleic Acids Res Web Server Issue With the abundant mammalian lncRNAs identified recently, a comprehensive annotation resource for these novel lncRNAs is an urgent need. Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating novel human lncRNAs on-the-fly. Here, with significant updates to multiple annotation modules, backend datasets and the code base, AnnoLnc2 continues the effort to provide the scientific community with a one-stop online portal for systematically annotating novel human and mouse lncRNAs with a comprehensive functional spectrum covering sequences, structure, expression, regulation, genetic association and evolution. In response to numerous requests from multiple users, a standalone package is also provided for large-scale offline analysis. We believe that updated AnnoLnc2 (http://annolnc.gao-lab.org/) will help both computational and bench biologists identify lncRNA functions and investigate underlying mechanisms. Oxford University Press 2020-07-02 2020-05-14 /pmc/articles/PMC7319567/ /pubmed/32406920 http://dx.doi.org/10.1093/nar/gkaa368 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Web Server Issue Ke, Lan Yang, De-Chang Wang, Yu Ding, Yang Gao, Ge AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse |
title | AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse |
title_full | AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse |
title_fullStr | AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse |
title_full_unstemmed | AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse |
title_short | AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse |
title_sort | annolnc2: the one-stop portal to systematically annotate novel lncrnas for human and mouse |
topic | Web Server Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319567/ https://www.ncbi.nlm.nih.gov/pubmed/32406920 http://dx.doi.org/10.1093/nar/gkaa368 |
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