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AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse

With the abundant mammalian lncRNAs identified recently, a comprehensive annotation resource for these novel lncRNAs is an urgent need. Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating novel human lncRNAs on-the-fly. Here, with signific...

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Detalles Bibliográficos
Autores principales: Ke, Lan, Yang, De-Chang, Wang, Yu, Ding, Yang, Gao, Ge
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319567/
https://www.ncbi.nlm.nih.gov/pubmed/32406920
http://dx.doi.org/10.1093/nar/gkaa368
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author Ke, Lan
Yang, De-Chang
Wang, Yu
Ding, Yang
Gao, Ge
author_facet Ke, Lan
Yang, De-Chang
Wang, Yu
Ding, Yang
Gao, Ge
author_sort Ke, Lan
collection PubMed
description With the abundant mammalian lncRNAs identified recently, a comprehensive annotation resource for these novel lncRNAs is an urgent need. Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating novel human lncRNAs on-the-fly. Here, with significant updates to multiple annotation modules, backend datasets and the code base, AnnoLnc2 continues the effort to provide the scientific community with a one-stop online portal for systematically annotating novel human and mouse lncRNAs with a comprehensive functional spectrum covering sequences, structure, expression, regulation, genetic association and evolution. In response to numerous requests from multiple users, a standalone package is also provided for large-scale offline analysis. We believe that updated AnnoLnc2 (http://annolnc.gao-lab.org/) will help both computational and bench biologists identify lncRNA functions and investigate underlying mechanisms.
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spelling pubmed-73195672020-07-01 AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse Ke, Lan Yang, De-Chang Wang, Yu Ding, Yang Gao, Ge Nucleic Acids Res Web Server Issue With the abundant mammalian lncRNAs identified recently, a comprehensive annotation resource for these novel lncRNAs is an urgent need. Since its first release in November 2016, AnnoLnc has been the only online server for comprehensively annotating novel human lncRNAs on-the-fly. Here, with significant updates to multiple annotation modules, backend datasets and the code base, AnnoLnc2 continues the effort to provide the scientific community with a one-stop online portal for systematically annotating novel human and mouse lncRNAs with a comprehensive functional spectrum covering sequences, structure, expression, regulation, genetic association and evolution. In response to numerous requests from multiple users, a standalone package is also provided for large-scale offline analysis. We believe that updated AnnoLnc2 (http://annolnc.gao-lab.org/) will help both computational and bench biologists identify lncRNA functions and investigate underlying mechanisms. Oxford University Press 2020-07-02 2020-05-14 /pmc/articles/PMC7319567/ /pubmed/32406920 http://dx.doi.org/10.1093/nar/gkaa368 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server Issue
Ke, Lan
Yang, De-Chang
Wang, Yu
Ding, Yang
Gao, Ge
AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse
title AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse
title_full AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse
title_fullStr AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse
title_full_unstemmed AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse
title_short AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse
title_sort annolnc2: the one-stop portal to systematically annotate novel lncrnas for human and mouse
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7319567/
https://www.ncbi.nlm.nih.gov/pubmed/32406920
http://dx.doi.org/10.1093/nar/gkaa368
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