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MaveQuest: a web resource for planning experimental tests of human variant effects
SUMMARY: Fully realizing the promise of personalized medicine will require rapid and accurate classification of pathogenic human variation. Multiplexed assays of variant effect (MAVEs) can experimentally test nearly all possible variants in selected gene targets. Planning a MAVE study involves ident...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320626/ https://www.ncbi.nlm.nih.gov/pubmed/32251504 http://dx.doi.org/10.1093/bioinformatics/btaa228 |
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author | Kuang, Da Weile, Jochen Li, Roujia Ouellette, Tom W Barber, Jarry A Roth, Frederick P |
author_facet | Kuang, Da Weile, Jochen Li, Roujia Ouellette, Tom W Barber, Jarry A Roth, Frederick P |
author_sort | Kuang, Da |
collection | PubMed |
description | SUMMARY: Fully realizing the promise of personalized medicine will require rapid and accurate classification of pathogenic human variation. Multiplexed assays of variant effect (MAVEs) can experimentally test nearly all possible variants in selected gene targets. Planning a MAVE study involves identifying target genes with clinical impact, and identifying scalable functional assays for that target. Here, we describe MaveQuest, a web-based resource enabling systematic variant effect mapping studies by identifying potential functional assays, disease phenotypes and clinical relevance for nearly all human protein-coding genes. AVAILABILITY AND IMPLEMENTATION: MaveQuest service: https://mavequest.varianteffect.org/. MaveQuest source code: https://github.com/kvnkuang/mavequest-front-end/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-7320626 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-73206262020-07-01 MaveQuest: a web resource for planning experimental tests of human variant effects Kuang, Da Weile, Jochen Li, Roujia Ouellette, Tom W Barber, Jarry A Roth, Frederick P Bioinformatics Applications Notes SUMMARY: Fully realizing the promise of personalized medicine will require rapid and accurate classification of pathogenic human variation. Multiplexed assays of variant effect (MAVEs) can experimentally test nearly all possible variants in selected gene targets. Planning a MAVE study involves identifying target genes with clinical impact, and identifying scalable functional assays for that target. Here, we describe MaveQuest, a web-based resource enabling systematic variant effect mapping studies by identifying potential functional assays, disease phenotypes and clinical relevance for nearly all human protein-coding genes. AVAILABILITY AND IMPLEMENTATION: MaveQuest service: https://mavequest.varianteffect.org/. MaveQuest source code: https://github.com/kvnkuang/mavequest-front-end/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2020-04-06 2020-06-15 /pmc/articles/PMC7320626/ /pubmed/32251504 http://dx.doi.org/10.1093/bioinformatics/btaa228 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Kuang, Da Weile, Jochen Li, Roujia Ouellette, Tom W Barber, Jarry A Roth, Frederick P MaveQuest: a web resource for planning experimental tests of human variant effects |
title | MaveQuest: a web resource for planning experimental tests of human variant effects |
title_full | MaveQuest: a web resource for planning experimental tests of human variant effects |
title_fullStr | MaveQuest: a web resource for planning experimental tests of human variant effects |
title_full_unstemmed | MaveQuest: a web resource for planning experimental tests of human variant effects |
title_short | MaveQuest: a web resource for planning experimental tests of human variant effects |
title_sort | mavequest: a web resource for planning experimental tests of human variant effects |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320626/ https://www.ncbi.nlm.nih.gov/pubmed/32251504 http://dx.doi.org/10.1093/bioinformatics/btaa228 |
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