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MaveQuest: a web resource for planning experimental tests of human variant effects

SUMMARY: Fully realizing the promise of personalized medicine will require rapid and accurate classification of pathogenic human variation. Multiplexed assays of variant effect (MAVEs) can experimentally test nearly all possible variants in selected gene targets. Planning a MAVE study involves ident...

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Detalles Bibliográficos
Autores principales: Kuang, Da, Weile, Jochen, Li, Roujia, Ouellette, Tom W, Barber, Jarry A, Roth, Frederick P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320626/
https://www.ncbi.nlm.nih.gov/pubmed/32251504
http://dx.doi.org/10.1093/bioinformatics/btaa228
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author Kuang, Da
Weile, Jochen
Li, Roujia
Ouellette, Tom W
Barber, Jarry A
Roth, Frederick P
author_facet Kuang, Da
Weile, Jochen
Li, Roujia
Ouellette, Tom W
Barber, Jarry A
Roth, Frederick P
author_sort Kuang, Da
collection PubMed
description SUMMARY: Fully realizing the promise of personalized medicine will require rapid and accurate classification of pathogenic human variation. Multiplexed assays of variant effect (MAVEs) can experimentally test nearly all possible variants in selected gene targets. Planning a MAVE study involves identifying target genes with clinical impact, and identifying scalable functional assays for that target. Here, we describe MaveQuest, a web-based resource enabling systematic variant effect mapping studies by identifying potential functional assays, disease phenotypes and clinical relevance for nearly all human protein-coding genes. AVAILABILITY AND IMPLEMENTATION: MaveQuest service: https://mavequest.varianteffect.org/. MaveQuest source code: https://github.com/kvnkuang/mavequest-front-end/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-73206262020-07-01 MaveQuest: a web resource for planning experimental tests of human variant effects Kuang, Da Weile, Jochen Li, Roujia Ouellette, Tom W Barber, Jarry A Roth, Frederick P Bioinformatics Applications Notes SUMMARY: Fully realizing the promise of personalized medicine will require rapid and accurate classification of pathogenic human variation. Multiplexed assays of variant effect (MAVEs) can experimentally test nearly all possible variants in selected gene targets. Planning a MAVE study involves identifying target genes with clinical impact, and identifying scalable functional assays for that target. Here, we describe MaveQuest, a web-based resource enabling systematic variant effect mapping studies by identifying potential functional assays, disease phenotypes and clinical relevance for nearly all human protein-coding genes. AVAILABILITY AND IMPLEMENTATION: MaveQuest service: https://mavequest.varianteffect.org/. MaveQuest source code: https://github.com/kvnkuang/mavequest-front-end/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2020-04-06 2020-06-15 /pmc/articles/PMC7320626/ /pubmed/32251504 http://dx.doi.org/10.1093/bioinformatics/btaa228 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Kuang, Da
Weile, Jochen
Li, Roujia
Ouellette, Tom W
Barber, Jarry A
Roth, Frederick P
MaveQuest: a web resource for planning experimental tests of human variant effects
title MaveQuest: a web resource for planning experimental tests of human variant effects
title_full MaveQuest: a web resource for planning experimental tests of human variant effects
title_fullStr MaveQuest: a web resource for planning experimental tests of human variant effects
title_full_unstemmed MaveQuest: a web resource for planning experimental tests of human variant effects
title_short MaveQuest: a web resource for planning experimental tests of human variant effects
title_sort mavequest: a web resource for planning experimental tests of human variant effects
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320626/
https://www.ncbi.nlm.nih.gov/pubmed/32251504
http://dx.doi.org/10.1093/bioinformatics/btaa228
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