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The Dementias Platform UK (DPUK) Data Portal
The Dementias Platform UK Data Portal is a data repository facilitating access to data for 3 370 929 individuals in 42 cohorts. The Data Portal is an end-to-end data management solution providing a secure, fully auditable, remote access environment for the analysis of cohort data. All projects utili...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320955/ https://www.ncbi.nlm.nih.gov/pubmed/32328990 http://dx.doi.org/10.1007/s10654-020-00633-4 |
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author | Bauermeister, Sarah Orton, Christopher Thompson, Simon Barker, Roger A. Bauermeister, Joshua R. Ben-Shlomo, Yoav Brayne, Carol Burn, David Campbell, Archie Calvin, Catherine Chandran, Siddharthan Chaturvedi, Nishi Chêne, Geneviève Chessell, Iain P. Corbett, Anne Davis, Daniel H. J. Denis, Mike Dufouil, Carole Elliott, Paul Fox, Nick Hill, Derek Hofer, Scott M. Hu, Michele T. Jindra, Christoph Kee, Frank Kim, Chi-Hun Kim, Changsoo Kivimaki, Mika Koychev, Ivan Lawson, Rachael A. Linden, Gerry J. Lyons, Ronan A. Mackay, Clare Matthews, Paul M. McGuiness, Bernadette Middleton, Lefkos Moody, Catherine Moore, Katrina Na, Duk L. O’Brien, John T. Ourselin, Sebastien Paranjothy, Shantini Park, Ki-Soo Porteous, David J. Richards, Marcus Ritchie, Craig W. Rohrer, Jonathan D. Rossor, Martin N. Rowe, James B. Scahill, Rachael Schnier, Christian Schott, Jonathan M. Seo, Sang W. South, Matthew Steptoe, Matthew Tabrizi, Sarah J. Tales, Andrea Tillin, Therese Timpson, Nicholas J. Toga, Arthur W. Visser, Pieter-Jelle Wade-Martins, Richard Wilkinson, Tim Williams, Julie Wong, Andrew Gallacher, John E. J. |
author_facet | Bauermeister, Sarah Orton, Christopher Thompson, Simon Barker, Roger A. Bauermeister, Joshua R. Ben-Shlomo, Yoav Brayne, Carol Burn, David Campbell, Archie Calvin, Catherine Chandran, Siddharthan Chaturvedi, Nishi Chêne, Geneviève Chessell, Iain P. Corbett, Anne Davis, Daniel H. J. Denis, Mike Dufouil, Carole Elliott, Paul Fox, Nick Hill, Derek Hofer, Scott M. Hu, Michele T. Jindra, Christoph Kee, Frank Kim, Chi-Hun Kim, Changsoo Kivimaki, Mika Koychev, Ivan Lawson, Rachael A. Linden, Gerry J. Lyons, Ronan A. Mackay, Clare Matthews, Paul M. McGuiness, Bernadette Middleton, Lefkos Moody, Catherine Moore, Katrina Na, Duk L. O’Brien, John T. Ourselin, Sebastien Paranjothy, Shantini Park, Ki-Soo Porteous, David J. Richards, Marcus Ritchie, Craig W. Rohrer, Jonathan D. Rossor, Martin N. Rowe, James B. Scahill, Rachael Schnier, Christian Schott, Jonathan M. Seo, Sang W. South, Matthew Steptoe, Matthew Tabrizi, Sarah J. Tales, Andrea Tillin, Therese Timpson, Nicholas J. Toga, Arthur W. Visser, Pieter-Jelle Wade-Martins, Richard Wilkinson, Tim Williams, Julie Wong, Andrew Gallacher, John E. J. |
author_sort | Bauermeister, Sarah |
collection | PubMed |
description | The Dementias Platform UK Data Portal is a data repository facilitating access to data for 3 370 929 individuals in 42 cohorts. The Data Portal is an end-to-end data management solution providing a secure, fully auditable, remote access environment for the analysis of cohort data. All projects utilising the data are by default collaborations with the cohort research teams generating the data. The Data Portal uses UK Secure eResearch Platform infrastructure to provide three core utilities: data discovery, access, and analysis. These are delivered using a 7 layered architecture comprising: data ingestion, data curation, platform interoperability, data discovery, access brokerage, data analysis and knowledge preservation. Automated, streamlined, and standardised procedures reduce the administrative burden for all stakeholders, particularly for requests involving multiple independent datasets, where a single request may be forwarded to multiple data controllers. Researchers are provided with their own secure ‘lab’ using VMware which is accessed using two factor authentication. Over the last 2 years, 160 project proposals involving 579 individual cohort data access requests were received. These were received from 268 applicants spanning 72 institutions (56 academic, 13 commercial, 3 government) in 16 countries with 84 requests involving multiple cohorts. Projects are varied including multi-modal, machine learning, and Mendelian randomisation analyses. Data access is usually free at point of use although a small number of cohorts require a data access fee. |
format | Online Article Text |
id | pubmed-7320955 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-73209552020-07-01 The Dementias Platform UK (DPUK) Data Portal Bauermeister, Sarah Orton, Christopher Thompson, Simon Barker, Roger A. Bauermeister, Joshua R. Ben-Shlomo, Yoav Brayne, Carol Burn, David Campbell, Archie Calvin, Catherine Chandran, Siddharthan Chaturvedi, Nishi Chêne, Geneviève Chessell, Iain P. Corbett, Anne Davis, Daniel H. J. Denis, Mike Dufouil, Carole Elliott, Paul Fox, Nick Hill, Derek Hofer, Scott M. Hu, Michele T. Jindra, Christoph Kee, Frank Kim, Chi-Hun Kim, Changsoo Kivimaki, Mika Koychev, Ivan Lawson, Rachael A. Linden, Gerry J. Lyons, Ronan A. Mackay, Clare Matthews, Paul M. McGuiness, Bernadette Middleton, Lefkos Moody, Catherine Moore, Katrina Na, Duk L. O’Brien, John T. Ourselin, Sebastien Paranjothy, Shantini Park, Ki-Soo Porteous, David J. Richards, Marcus Ritchie, Craig W. Rohrer, Jonathan D. Rossor, Martin N. Rowe, James B. Scahill, Rachael Schnier, Christian Schott, Jonathan M. Seo, Sang W. South, Matthew Steptoe, Matthew Tabrizi, Sarah J. Tales, Andrea Tillin, Therese Timpson, Nicholas J. Toga, Arthur W. Visser, Pieter-Jelle Wade-Martins, Richard Wilkinson, Tim Williams, Julie Wong, Andrew Gallacher, John E. J. Eur J Epidemiol Data Resource The Dementias Platform UK Data Portal is a data repository facilitating access to data for 3 370 929 individuals in 42 cohorts. The Data Portal is an end-to-end data management solution providing a secure, fully auditable, remote access environment for the analysis of cohort data. All projects utilising the data are by default collaborations with the cohort research teams generating the data. The Data Portal uses UK Secure eResearch Platform infrastructure to provide three core utilities: data discovery, access, and analysis. These are delivered using a 7 layered architecture comprising: data ingestion, data curation, platform interoperability, data discovery, access brokerage, data analysis and knowledge preservation. Automated, streamlined, and standardised procedures reduce the administrative burden for all stakeholders, particularly for requests involving multiple independent datasets, where a single request may be forwarded to multiple data controllers. Researchers are provided with their own secure ‘lab’ using VMware which is accessed using two factor authentication. Over the last 2 years, 160 project proposals involving 579 individual cohort data access requests were received. These were received from 268 applicants spanning 72 institutions (56 academic, 13 commercial, 3 government) in 16 countries with 84 requests involving multiple cohorts. Projects are varied including multi-modal, machine learning, and Mendelian randomisation analyses. Data access is usually free at point of use although a small number of cohorts require a data access fee. Springer Netherlands 2020-04-23 2020 /pmc/articles/PMC7320955/ /pubmed/32328990 http://dx.doi.org/10.1007/s10654-020-00633-4 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Data Resource Bauermeister, Sarah Orton, Christopher Thompson, Simon Barker, Roger A. Bauermeister, Joshua R. Ben-Shlomo, Yoav Brayne, Carol Burn, David Campbell, Archie Calvin, Catherine Chandran, Siddharthan Chaturvedi, Nishi Chêne, Geneviève Chessell, Iain P. Corbett, Anne Davis, Daniel H. J. Denis, Mike Dufouil, Carole Elliott, Paul Fox, Nick Hill, Derek Hofer, Scott M. Hu, Michele T. Jindra, Christoph Kee, Frank Kim, Chi-Hun Kim, Changsoo Kivimaki, Mika Koychev, Ivan Lawson, Rachael A. Linden, Gerry J. Lyons, Ronan A. Mackay, Clare Matthews, Paul M. McGuiness, Bernadette Middleton, Lefkos Moody, Catherine Moore, Katrina Na, Duk L. O’Brien, John T. Ourselin, Sebastien Paranjothy, Shantini Park, Ki-Soo Porteous, David J. Richards, Marcus Ritchie, Craig W. Rohrer, Jonathan D. Rossor, Martin N. Rowe, James B. Scahill, Rachael Schnier, Christian Schott, Jonathan M. Seo, Sang W. South, Matthew Steptoe, Matthew Tabrizi, Sarah J. Tales, Andrea Tillin, Therese Timpson, Nicholas J. Toga, Arthur W. Visser, Pieter-Jelle Wade-Martins, Richard Wilkinson, Tim Williams, Julie Wong, Andrew Gallacher, John E. J. The Dementias Platform UK (DPUK) Data Portal |
title | The Dementias Platform UK (DPUK) Data Portal |
title_full | The Dementias Platform UK (DPUK) Data Portal |
title_fullStr | The Dementias Platform UK (DPUK) Data Portal |
title_full_unstemmed | The Dementias Platform UK (DPUK) Data Portal |
title_short | The Dementias Platform UK (DPUK) Data Portal |
title_sort | dementias platform uk (dpuk) data portal |
topic | Data Resource |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320955/ https://www.ncbi.nlm.nih.gov/pubmed/32328990 http://dx.doi.org/10.1007/s10654-020-00633-4 |
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