Cargando…

Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance

The COVID-19 pandemic has created a public health crisis. Because SARS-CoV-2 can spread from individuals with pre-symptomatic, symptomatic, and asymptomatic infections, the re-opening of societies and the control of virus spread will be facilitated by robust surveillance, for which virus testing wil...

Descripción completa

Detalles Bibliográficos
Autores principales: Larremore, Daniel B., Wilder, Bryan, Lester, Evan, Shehata, Soraya, Burke, James M., Hay, James A., Milind, Tambe, Mina, Michael J., Parker, Roy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7325181/
https://www.ncbi.nlm.nih.gov/pubmed/32607516
http://dx.doi.org/10.1101/2020.06.22.20136309
_version_ 1783552102401835008
author Larremore, Daniel B.
Wilder, Bryan
Lester, Evan
Shehata, Soraya
Burke, James M.
Hay, James A.
Milind, Tambe
Mina, Michael J.
Parker, Roy
author_facet Larremore, Daniel B.
Wilder, Bryan
Lester, Evan
Shehata, Soraya
Burke, James M.
Hay, James A.
Milind, Tambe
Mina, Michael J.
Parker, Roy
author_sort Larremore, Daniel B.
collection PubMed
description The COVID-19 pandemic has created a public health crisis. Because SARS-CoV-2 can spread from individuals with pre-symptomatic, symptomatic, and asymptomatic infections, the re-opening of societies and the control of virus spread will be facilitated by robust surveillance, for which virus testing will often be central. After infection, individuals undergo a period of incubation during which viral titers are usually too low to detect, followed by an exponential viral growth, leading to a peak viral load and infectiousness, and ending with declining viral levels and clearance. Given the pattern of viral load kinetics, we model surveillance effectiveness considering test sensitivities, frequency, and sample-to-answer reporting time. These results demonstrate that effective surveillance depends largely on frequency of testing and the speed of reporting, and is only marginally improved by high test sensitivity. We therefore conclude that surveillance should prioritize accessibility, frequency, and sample-to-answer time; analytical limits of detection should be secondary.
format Online
Article
Text
id pubmed-7325181
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Cold Spring Harbor Laboratory
record_format MEDLINE/PubMed
spelling pubmed-73251812020-06-30 Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance Larremore, Daniel B. Wilder, Bryan Lester, Evan Shehata, Soraya Burke, James M. Hay, James A. Milind, Tambe Mina, Michael J. Parker, Roy medRxiv Article The COVID-19 pandemic has created a public health crisis. Because SARS-CoV-2 can spread from individuals with pre-symptomatic, symptomatic, and asymptomatic infections, the re-opening of societies and the control of virus spread will be facilitated by robust surveillance, for which virus testing will often be central. After infection, individuals undergo a period of incubation during which viral titers are usually too low to detect, followed by an exponential viral growth, leading to a peak viral load and infectiousness, and ending with declining viral levels and clearance. Given the pattern of viral load kinetics, we model surveillance effectiveness considering test sensitivities, frequency, and sample-to-answer reporting time. These results demonstrate that effective surveillance depends largely on frequency of testing and the speed of reporting, and is only marginally improved by high test sensitivity. We therefore conclude that surveillance should prioritize accessibility, frequency, and sample-to-answer time; analytical limits of detection should be secondary. Cold Spring Harbor Laboratory 2020-09-08 /pmc/articles/PMC7325181/ /pubmed/32607516 http://dx.doi.org/10.1101/2020.06.22.20136309 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Larremore, Daniel B.
Wilder, Bryan
Lester, Evan
Shehata, Soraya
Burke, James M.
Hay, James A.
Milind, Tambe
Mina, Michael J.
Parker, Roy
Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance
title Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance
title_full Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance
title_fullStr Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance
title_full_unstemmed Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance
title_short Test sensitivity is secondary to frequency and turnaround time for COVID-19 surveillance
title_sort test sensitivity is secondary to frequency and turnaround time for covid-19 surveillance
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7325181/
https://www.ncbi.nlm.nih.gov/pubmed/32607516
http://dx.doi.org/10.1101/2020.06.22.20136309
work_keys_str_mv AT larremoredanielb testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT wilderbryan testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT lesterevan testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT shehatasoraya testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT burkejamesm testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT hayjamesa testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT milindtambe testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT minamichaelj testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance
AT parkerroy testsensitivityissecondarytofrequencyandturnaroundtimeforcovid19surveillance