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mTORC1 Enhances Early Phase Ribosome Processivity
During translation elongation, the ribosome serially adds amino acids to a growing polypeptide over many rounds of catalysis. The ribosome remains bound to mRNAs over these multiple catalytic cycles, requiring high processivity. Despite its importance to translation, relatively little is known about...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7325874/ https://www.ncbi.nlm.nih.gov/pubmed/32656229 http://dx.doi.org/10.3389/fmolb.2020.00117 |
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author | An, Erin Friend, Kyle |
author_facet | An, Erin Friend, Kyle |
author_sort | An, Erin |
collection | PubMed |
description | During translation elongation, the ribosome serially adds amino acids to a growing polypeptide over many rounds of catalysis. The ribosome remains bound to mRNAs over these multiple catalytic cycles, requiring high processivity. Despite its importance to translation, relatively little is known about how mRNA sequences or signaling pathways might enhance or reduce ribosome processivity. Here, we describe a metric for ribosome processivity, the ribosome density index (RDI), which is readily calculated from ribosomal profiling data. We show that ribosome processivity is not strongly influenced by open-reading frame (ORF) length or codon optimality. However, we do observe that ribosome processivity exists in two phases and that the early phase of ribosome processivity is enhanced by mTORC1, a key translational regulator. By showing that ribosome processivity is regulated, our findings suggest an additional layer of control that the cell can exert to govern gene expression. |
format | Online Article Text |
id | pubmed-7325874 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73258742020-07-09 mTORC1 Enhances Early Phase Ribosome Processivity An, Erin Friend, Kyle Front Mol Biosci Molecular Biosciences During translation elongation, the ribosome serially adds amino acids to a growing polypeptide over many rounds of catalysis. The ribosome remains bound to mRNAs over these multiple catalytic cycles, requiring high processivity. Despite its importance to translation, relatively little is known about how mRNA sequences or signaling pathways might enhance or reduce ribosome processivity. Here, we describe a metric for ribosome processivity, the ribosome density index (RDI), which is readily calculated from ribosomal profiling data. We show that ribosome processivity is not strongly influenced by open-reading frame (ORF) length or codon optimality. However, we do observe that ribosome processivity exists in two phases and that the early phase of ribosome processivity is enhanced by mTORC1, a key translational regulator. By showing that ribosome processivity is regulated, our findings suggest an additional layer of control that the cell can exert to govern gene expression. Frontiers Media S.A. 2020-06-19 /pmc/articles/PMC7325874/ /pubmed/32656229 http://dx.doi.org/10.3389/fmolb.2020.00117 Text en Copyright © 2020 An and Friend. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences An, Erin Friend, Kyle mTORC1 Enhances Early Phase Ribosome Processivity |
title | mTORC1 Enhances Early Phase Ribosome Processivity |
title_full | mTORC1 Enhances Early Phase Ribosome Processivity |
title_fullStr | mTORC1 Enhances Early Phase Ribosome Processivity |
title_full_unstemmed | mTORC1 Enhances Early Phase Ribosome Processivity |
title_short | mTORC1 Enhances Early Phase Ribosome Processivity |
title_sort | mtorc1 enhances early phase ribosome processivity |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7325874/ https://www.ncbi.nlm.nih.gov/pubmed/32656229 http://dx.doi.org/10.3389/fmolb.2020.00117 |
work_keys_str_mv | AT anerin mtorc1enhancesearlyphaseribosomeprocessivity AT friendkyle mtorc1enhancesearlyphaseribosomeprocessivity |