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A framework for on-implant spike sorting based on salient feature selection

On-implant spike sorting methods employ static feature extraction/selection techniques to minimize the hardware cost. Here we propose a novel framework for real-time spike sorting based on dynamic selection of features. We select salient features that maximize the geometric-mean of between-class dis...

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Detalles Bibliográficos
Autores principales: Shaeri, MohammadAli, Sodagar, Amir M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327047/
https://www.ncbi.nlm.nih.gov/pubmed/32606311
http://dx.doi.org/10.1038/s41467-020-17031-9
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author Shaeri, MohammadAli
Sodagar, Amir M.
author_facet Shaeri, MohammadAli
Sodagar, Amir M.
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description On-implant spike sorting methods employ static feature extraction/selection techniques to minimize the hardware cost. Here we propose a novel framework for real-time spike sorting based on dynamic selection of features. We select salient features that maximize the geometric-mean of between-class distances as well as the associated homogeneity index effectively to best discriminate spikes for classification. Wave-shape classification is performed based on a multi-label window discrimination approach. An external module calculates the salient features and discrimination windows through optimizing a replica of the on-implant operation, and then configures the on-implant spike sorter for real-time online operation. Hardware implementation of the on-implant online spike sorter for 512 channels of concurrent extra-cellular neural signals is reported, with an average classification accuracy of ~88%. Compared with other similar methods, our method shows reduction in classification error by a factor of ~2, and also reduction in the required memory space by a factor of ~5.
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spelling pubmed-73270472020-07-06 A framework for on-implant spike sorting based on salient feature selection Shaeri, MohammadAli Sodagar, Amir M. Nat Commun Article On-implant spike sorting methods employ static feature extraction/selection techniques to minimize the hardware cost. Here we propose a novel framework for real-time spike sorting based on dynamic selection of features. We select salient features that maximize the geometric-mean of between-class distances as well as the associated homogeneity index effectively to best discriminate spikes for classification. Wave-shape classification is performed based on a multi-label window discrimination approach. An external module calculates the salient features and discrimination windows through optimizing a replica of the on-implant operation, and then configures the on-implant spike sorter for real-time online operation. Hardware implementation of the on-implant online spike sorter for 512 channels of concurrent extra-cellular neural signals is reported, with an average classification accuracy of ~88%. Compared with other similar methods, our method shows reduction in classification error by a factor of ~2, and also reduction in the required memory space by a factor of ~5. Nature Publishing Group UK 2020-06-30 /pmc/articles/PMC7327047/ /pubmed/32606311 http://dx.doi.org/10.1038/s41467-020-17031-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Shaeri, MohammadAli
Sodagar, Amir M.
A framework for on-implant spike sorting based on salient feature selection
title A framework for on-implant spike sorting based on salient feature selection
title_full A framework for on-implant spike sorting based on salient feature selection
title_fullStr A framework for on-implant spike sorting based on salient feature selection
title_full_unstemmed A framework for on-implant spike sorting based on salient feature selection
title_short A framework for on-implant spike sorting based on salient feature selection
title_sort framework for on-implant spike sorting based on salient feature selection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327047/
https://www.ncbi.nlm.nih.gov/pubmed/32606311
http://dx.doi.org/10.1038/s41467-020-17031-9
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