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Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma

The present study aimed to screen the immune-related genes (IRGs) in patients with liver hepatocellular carcinoma (LIHC) and construct a synthetic index for indicating the prognostic outcomes. The bioinformatic analysis was performed on the data of 374 cancer tissues and 50 normal tissues, which wer...

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Autores principales: Shi, Weidong, Feng, Lanyun, Dong, Shu, Ning, Zhouyu, Hua, Yongqiang, Liu, Luming, Chen, Zhen, Meng, Zhiqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327182/
https://www.ncbi.nlm.nih.gov/pubmed/32579175
http://dx.doi.org/10.1042/BSR20194240
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author Shi, Weidong
Feng, Lanyun
Dong, Shu
Ning, Zhouyu
Hua, Yongqiang
Liu, Luming
Chen, Zhen
Meng, Zhiqiang
author_facet Shi, Weidong
Feng, Lanyun
Dong, Shu
Ning, Zhouyu
Hua, Yongqiang
Liu, Luming
Chen, Zhen
Meng, Zhiqiang
author_sort Shi, Weidong
collection PubMed
description The present study aimed to screen the immune-related genes (IRGs) in patients with liver hepatocellular carcinoma (LIHC) and construct a synthetic index for indicating the prognostic outcomes. The bioinformatic analysis was performed on the data of 374 cancer tissues and 50 normal tissues, which were downloaded from TCGA database. We observed that 17 differentially expressed IRGs were significantly associated with survival in LIHC patients. These LIHC-specific IRGs were validated with function analysis and molecular characteristics. Cox analysis was applied for constructing a RiskScore for predicting the survival. The RiskScore involved six IRGs and corresponding coefficients, which was calculated with the following formula: RiskScore = [Expression level of FABP5 *(0.064)] + [Expression level of TRAF3 * (0.198)] + [Expression level of CSPG5 * (0.416)] + [Expression level of IL17D * (0.197)] + [Expression level of STC2 * (0.036)] + [Expression level of BRD8 * (0.140)]. The RiskScore was positively associated with the poor survival, which was verified with the dataset from ICGC database. Further analysis revealed that the RiskScore was independent of any other clinical feature, while it was linked with the infiltration levels of six types of immune cells. Our study reported the survival-associated IRGs in LIHC and then constructed IRGs-based RiskScore as prognostic indicator for screening patients with high risk of short survival. Both the screened IRGs and IRGs-based RiskScore were clinically significant, which may be informative for promoting the individualized immunotherapy against LIHC.
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spelling pubmed-73271822020-07-10 Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma Shi, Weidong Feng, Lanyun Dong, Shu Ning, Zhouyu Hua, Yongqiang Liu, Luming Chen, Zhen Meng, Zhiqiang Biosci Rep Bioinformatics The present study aimed to screen the immune-related genes (IRGs) in patients with liver hepatocellular carcinoma (LIHC) and construct a synthetic index for indicating the prognostic outcomes. The bioinformatic analysis was performed on the data of 374 cancer tissues and 50 normal tissues, which were downloaded from TCGA database. We observed that 17 differentially expressed IRGs were significantly associated with survival in LIHC patients. These LIHC-specific IRGs were validated with function analysis and molecular characteristics. Cox analysis was applied for constructing a RiskScore for predicting the survival. The RiskScore involved six IRGs and corresponding coefficients, which was calculated with the following formula: RiskScore = [Expression level of FABP5 *(0.064)] + [Expression level of TRAF3 * (0.198)] + [Expression level of CSPG5 * (0.416)] + [Expression level of IL17D * (0.197)] + [Expression level of STC2 * (0.036)] + [Expression level of BRD8 * (0.140)]. The RiskScore was positively associated with the poor survival, which was verified with the dataset from ICGC database. Further analysis revealed that the RiskScore was independent of any other clinical feature, while it was linked with the infiltration levels of six types of immune cells. Our study reported the survival-associated IRGs in LIHC and then constructed IRGs-based RiskScore as prognostic indicator for screening patients with high risk of short survival. Both the screened IRGs and IRGs-based RiskScore were clinically significant, which may be informative for promoting the individualized immunotherapy against LIHC. Portland Press Ltd. 2020-06-30 /pmc/articles/PMC7327182/ /pubmed/32579175 http://dx.doi.org/10.1042/BSR20194240 Text en © 2020 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY).
spellingShingle Bioinformatics
Shi, Weidong
Feng, Lanyun
Dong, Shu
Ning, Zhouyu
Hua, Yongqiang
Liu, Luming
Chen, Zhen
Meng, Zhiqiang
Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma
title Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma
title_full Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma
title_fullStr Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma
title_full_unstemmed Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma
title_short Exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma
title_sort exploration of prognostic index based on immune-related genes in patients with liver hepatocellular carcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327182/
https://www.ncbi.nlm.nih.gov/pubmed/32579175
http://dx.doi.org/10.1042/BSR20194240
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