Cargando…

Alignment of Cell Lineage Trees Elucidates Genetic Programs for the Development and Evolution of Cell Types

A full understanding of the developmental process requires fine-scale characterization of cell divisions and cell types, which are naturally organized as the developmental cell lineage tree (CLT). Technological breakthroughs facilitated determination of more CLTs, but complete comprehension of the d...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yuan, Meng, Yang, Xujiang, Lin, Jinghua, Cao, Xiaolong, Chen, Feng, Zhang, Xiaoyu, Li, Zizhang, Zheng, Guifeng, Wang, Xueqin, Chen, Xiaoshu, Yang, Jian-Rong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7327887/ https://www.ncbi.nlm.nih.gov/pubmed/32599560 http://dx.doi.org/10.1016/j.isci.2020.101273

Ejemplares similares

Genome-wide probing of eukaryotic nascent RNA structure elucidates cotranscriptional folding and its antimutagenic effect
por: Yu, Gongwang, et al.
Publicado: (2023)

Phylogenetic Comparative Analysis of Single-Cell Transcriptomes Reveals Constrained Accumulation of Gene Expression Heterogeneity during Clonal Expansion
por: Chen, Feng, et al.
Publicado: (2023)

Reconstruction of Cell Lineage Trees in Mice
por: Wasserstrom, Adam, et al.
Publicado: (2008)

Maps of variability in cell lineage trees
por: Hicks, Damien G., et al.
Publicado: (2019)

Will Genome Analysis Elucidate Evolution, Global Transmission and Virulence of Neisseria Meningitidis Lineages?
por: Golparian, Daniel, et al.
Publicado: (2015)

Elucidating dynamic cell lineages and gene networks in time-course single cell differentiation
por: Zhang, Mengrui, et al.
Publicado: (2023)

On the statistical analysis of single cell lineage trees
por: Stadler, Tanja, et al.
Publicado: (2018)

Entropic effects in cell lineage tree packings
por: Alsous, Jasmin Imran, et al.
Publicado: (2018)

Alignment of single-cell trajectory trees with CAPITAL
por: Sugihara, Reiichi, et al.
Publicado: (2022)

Reconstructing B cell lineage trees with minimum spanning tree and genotype abundances
por: Abdollahi, Nika, et al.
Publicado: (2023)

Efficient reconstruction of cell lineage trees for cell ancestry and cancer
por: Jang, Yeongjun, et al.
Publicado: (2023)

Single-cell transcriptomics reveals heterogeneity and intercellular crosstalk in human intervertebral disc degeneration
por: Wang, Dandan, et al.
Publicado: (2023)

A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon strings
por: Zhang, Louxin, et al.
Publicado: (2023)

The tree alignment problem
por: Varón, Andrés, et al.
Publicado: (2012)

The gap-free genome of mulberry elucidates the architecture and evolution of polycentric chromosomes
por: Ma, Bi, et al.
Publicado: (2023)

Elucidating the Beta-Diversity of the Microbiome: from Global Alignment to Local Alignment
por: Su, Xiaoquan
Publicado: (2021)

Alignment using genetic programming with causal trees for identification of protein functions
por: Hung, Chun-Min, et al.
Publicado: (2006)

Drawing Details into the Lineage Tree
por: Verzi, Michael Paul
Publicado: (2016)

AncesTree: An interactive immunoglobulin lineage tree visualizer
por: Foglierini, Mathilde, et al.
Publicado: (2020)

Gene order alignment on trees with multiOrthoAlign
por: Benzaid, Billel, et al.
Publicado: (2014)

Fast alignment of fragmentation trees
por: Hufsky, Franziska, et al.
Publicado: (2012)

Single-cell protein secretomic signatures as potential correlates to tumor cell lineage evolution and cell–cell interaction
por: Kwak, Minsuk, et al.
Publicado: (2013)

Toward Elucidating Epigenetic and Metabolic Regulation of Stem Cell Lineage Plasticity in Skin Aging
por: Lyu, Ying, et al.
Publicado: (2022)

Genomic Variability within an Organism Exposes Its Cell Lineage Tree
por: Frumkin, Dan, et al.
Publicado: (2005)

Erratum: Single-Cell Protein Secretomic Signatures as Potential Correlates to Tumor Cell Lineage Evolution and Cell–Cell Interaction
por: Kwak, Minsuk, et al.
Publicado: (2013)

Collodictyon—An Ancient Lineage in the Tree of Eukaryotes
por: Zhao, Sen, et al.
Publicado: (2012)

Dosage sensitivity of X-linked genes in human embryonic single cells
por: Yang, Jian-Rong, et al.
Publicado: (2019)

Concatenated alignments and the case of the disappearing tree
por: Thiergart, Thorsten, et al.
Publicado: (2014)

Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm
por: Foroughmand-Araabi, Mohammad-Hadi, et al.
Publicado: (2022)

miR-18a-5p Promotes Proliferation and Migration of Vascular Smooth Muscle Cells by Activating the AKT/Extracellular Regulated Protein Kinases (ERK) Signaling Pathway
por: Zhang, Yuanheng, et al.
Publicado: (2020)

Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing Information on Microsatellite Mutations
por: Chapal-Ilani, Noa, et al.
Publicado: (2013)

On the journey from nematode to human, scientists dive by the zebrafish cell lineage tree
por: Shapiro, Ehud
Publicado: (2018)

Parameter inference for stochastic single-cell dynamics from lineage tree data
por: Kuzmanovska, Irena, et al.
Publicado: (2017)

An Ant-Inspired Track-to-Track Recovery Approach for Construction of Cell Lineage Trees
por: Wu, Di, et al.
Publicado: (2020)

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
por: Price, Morgan N., et al.
Publicado: (2010)

Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees
por: Yamada, Kazunori D., et al.
Publicado: (2016)

Environmental filtering structures tree functional traits combination and lineages across space in tropical tree assemblages
por: Asefa, Mengesha, et al.
Publicado: (2017)

Effect of limb rotation on radiographic alignment measurement in mal-aligned knees
por: Sun, Xiaoshu, et al.
Publicado: (2021)

Determinative Developmental Cell Lineages Are Robust to Cell Deaths
por: Yang, Jian-Rong, et al.
Publicado: (2014)

Elucidation of the Origin of the Monumental Olive Tree of Vouves in Crete, Greece
por: Bombarely, Aureliano, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_49hrje6j0p21i6gbj0k2gmcl0t