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Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method

Porcine parvovirus (PPV) is one of the major causes of reproductive pig disease. Due to its serious nature, wide spread and consequent great damage to the swine industry, an effective, rapid and convenient method for its detection is needed. A loop-mediated isothermal amplification (LAMP) assay was...

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Autores principales: Zhao, Kai, Hu, Ruili, Ni, Jianping, Liang, Jieling, He, Xizhong, Du, Yanan, Xu, Yan, Zhao, Binan, Zhang, Qi, Li, Chunhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7328634/
https://www.ncbi.nlm.nih.gov/pubmed/32621958
http://dx.doi.org/10.1016/j.jviromet.2020.113924
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author Zhao, Kai
Hu, Ruili
Ni, Jianping
Liang, Jieling
He, Xizhong
Du, Yanan
Xu, Yan
Zhao, Binan
Zhang, Qi
Li, Chunhua
author_facet Zhao, Kai
Hu, Ruili
Ni, Jianping
Liang, Jieling
He, Xizhong
Du, Yanan
Xu, Yan
Zhao, Binan
Zhang, Qi
Li, Chunhua
author_sort Zhao, Kai
collection PubMed
description Porcine parvovirus (PPV) is one of the major causes of reproductive pig disease. Due to its serious nature, wide spread and consequent great damage to the swine industry, an effective, rapid and convenient method for its detection is needed. A loop-mediated isothermal amplification (LAMP) assay was established to detect PPV infection. Two pairs of primers were specifically designed to recognize the six different sequences of open reading frame1 (ORF1) gene. The optimized LAMP program was as follows: 50 min at 59 °C followed by 3 min at 80 °C.The amplified products were analyzed both by visual inspection after staining with SYBR Green I dye and by conventional agarose gel electrophoresis. Both methods showed the same sensitivity. The limit of detection (LOD) for PPV by LAMP was 10 copies, which is 100-fold lower than conventional PCR. Our LAMP assay did not cross-react with other viruses. We used the established LAMP system to test 1100 field samples and detected 660 positives. The LAMP detection method for PPV represents a visual, sensitive and rapid assay which can detect the virus in the field, offering an attractive alternative for the PPV detection methods currently in use.
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spelling pubmed-73286342020-07-01 Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method Zhao, Kai Hu, Ruili Ni, Jianping Liang, Jieling He, Xizhong Du, Yanan Xu, Yan Zhao, Binan Zhang, Qi Li, Chunhua J Virol Methods Article Porcine parvovirus (PPV) is one of the major causes of reproductive pig disease. Due to its serious nature, wide spread and consequent great damage to the swine industry, an effective, rapid and convenient method for its detection is needed. A loop-mediated isothermal amplification (LAMP) assay was established to detect PPV infection. Two pairs of primers were specifically designed to recognize the six different sequences of open reading frame1 (ORF1) gene. The optimized LAMP program was as follows: 50 min at 59 °C followed by 3 min at 80 °C.The amplified products were analyzed both by visual inspection after staining with SYBR Green I dye and by conventional agarose gel electrophoresis. Both methods showed the same sensitivity. The limit of detection (LOD) for PPV by LAMP was 10 copies, which is 100-fold lower than conventional PCR. Our LAMP assay did not cross-react with other viruses. We used the established LAMP system to test 1100 field samples and detected 660 positives. The LAMP detection method for PPV represents a visual, sensitive and rapid assay which can detect the virus in the field, offering an attractive alternative for the PPV detection methods currently in use. Elsevier B.V. 2020-10 2020-07-01 /pmc/articles/PMC7328634/ /pubmed/32621958 http://dx.doi.org/10.1016/j.jviromet.2020.113924 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Zhao, Kai
Hu, Ruili
Ni, Jianping
Liang, Jieling
He, Xizhong
Du, Yanan
Xu, Yan
Zhao, Binan
Zhang, Qi
Li, Chunhua
Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method
title Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method
title_full Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method
title_fullStr Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method
title_full_unstemmed Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method
title_short Establishment of a porcine parvovirus (PPV) LAMP visual rapid detection method
title_sort establishment of a porcine parvovirus (ppv) lamp visual rapid detection method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7328634/
https://www.ncbi.nlm.nih.gov/pubmed/32621958
http://dx.doi.org/10.1016/j.jviromet.2020.113924
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