Cargando…

MicroGMT: A Mutation Tracker for SARS-CoV-2 and Other Microbial Genome Sequences

With the continued spread of SARS-CoV-2 virus around the world, researchers often need to quickly identify novel mutations in newly sequenced SARS-CoV-2 genomes for studying the molecular evolution and epidemiology of the virus. We have developed a Python package, MicroGMT, which takes either raw se...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xing, Yue, Li, Xiao, Gao, Xiang, Dong, Qunfeng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7330013/ https://www.ncbi.nlm.nih.gov/pubmed/32670259 http://dx.doi.org/10.3389/fmicb.2020.01502

Ejemplares similares

Survey of the Outer Detector with the CERN SPS Program GMT
por: Palma-Lopez, S, et al.
Publicado: (1990)

The Future of Direct Cardiac Reprogramming: Any GMT Cocktail Variety?
por: López-Muneta, Leyre, et al.
Publicado: (2020)

Investigation of the Viscoelastic Behavior Variation of Glass Mat Thermoplastics (GMT) in Compression Molding
por: Huang, Chao-Tsai, et al.
Publicado: (2019)

Galaxy mothur Toolset (GmT): a user-friendly application for 16S rRNA gene sequencing analysis using mothur
por: Hiltemann, Saskia D, et al.
Publicado: (2018)

Translation-Associated Mutational U-Pressure in the First ORF of SARS-CoV-2 and Other Coronaviruses
por: Khrustalev, Vladislav Victorovich, et al.
Publicado: (2020)

Protocol for a cluster randomised crossover pilot trial of Goal Management Training(+) (GMT(+)) for methamphetamine use disorder
por: Anderson, Alexandra C., et al.
Publicado: (2022)

Detection of Microbial Agents in Oropharyngeal and Nasopharyngeal Samples of SARS-CoV-2 Patients
por: Seckar, Tyler, et al.
Publicado: (2021)

Respiratory Microbial Co-infection With SARS-CoV-2
por: Massey, Bill W., et al.
Publicado: (2020)

Natural Polymorphisms Are Present in the Furin Cleavage Site of the SARS-CoV-2 Spike Glycoprotein
por: Xing, Yue, et al.
Publicado: (2020)

Cost-Effectiveness of Pneumococcal Vaccination in Adults in Italy: Comparing New Alternatives and Exploring the Role of GMT Ratios in Informing Vaccine Effectiveness
por: Restivo, Vincenzo, et al.
Publicado: (2023)

Global Mutational Sweep of SARS-CoV-2: From Chaos to Order
por: Wang, Xin, et al.
Publicado: (2022)

Geographic and Genomic Distribution of SARS-CoV-2 Mutations
por: Mercatelli, Daniele, et al.
Publicado: (2020)

MixviR: an R Package for Exploring Variation Associated with Genomic Sequence Data from Environmental SARS-CoV-2 and Other Mixed Microbial Samples
por: Sovic, Michael G., et al.
Publicado: (2022)

Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19
por: Ventero, Maria Paz, et al.
Publicado: (2021)

Enhancement of SARS-CoV-2 receptor-binding domain activity by two microbial defensins
por: Gao, Bin, et al.
Publicado: (2023)

Mutational spectra of SARS-CoV-2 isolated from animals
por: Elaswad, Ahmed, et al.
Publicado: (2020)

Bayesian estimation of the seroprevalence of antibodies to SARS-CoV-2
por: Dong, Qunfeng, et al.
Publicado: (2020)

CovMT: an interactive SARS-CoV-2 mutation tracker, with a focus on critical variants
por: Alam, Intikhab, et al.
Publicado: (2021)

Combating SARS-CoV-2: leveraging microbicidal experiences with other emerging/re-emerging viruses
por: Ijaz, M. Khalid, et al.
Publicado: (2020)

Outbreak of Influenza and Other Respiratory Viruses in Hospitalized Patients Alongside the SARS-CoV-2 Pandemic
por: Fratty, Ilana S., et al.
Publicado: (2022)

Micro-Technologies for Assessing Microbial Dynamics in Controlled Environments
por: Davidson, Shanna-Leigh, et al.
Publicado: (2022)

Innate Immunity Evasion Strategies of Highly Pathogenic Coronaviruses: SARS-CoV, MERS-CoV, and SARS-CoV-2
por: Li, Jin-Yan, et al.
Publicado: (2021)

Rapid and sensitive amplicon-based genome sequencing of SARS-CoV-2
por: Park, Changwoo, et al.
Publicado: (2022)

Soil microbial community parameters affected by microplastics and other plastic residues
por: Li, Yüze, et al.
Publicado: (2023)

Characteristics of the Microbial Community in the Production of Chinese Rice-Flavor Baijiu and Comparisons With the Microflora of Other Flavors of Baijiu
por: Hu, Yuanliang, et al.
Publicado: (2021)

Performance of SARS-CoV-2 Antigen-Detecting Rapid Diagnostic Tests for Omicron and Other Variants of Concern
por: Raïch-Regué, Dàlia, et al.
Publicado: (2022)

Transcript of WORLD NEUROSURGERY Twitter Chat with Walter Jean, M.D., hosted by Aliyu Ndajiwo, M.D., May 30, 2020 at 20:00 GMT
por: Jean, Walter, et al.
Publicado: (2020)

The Mutational Landscape of SARS-CoV-2 Variants of Concern Recovered From Egyptian Patients in 2021
por: Seadawy, Mohamed G., et al.
Publicado: (2022)

Microbial dark matter sequences verification in amplicon sequencing and environmental metagenomics data
por: Barak, Hana, et al.
Publicado: (2023)

An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes
por: Horn, Hannes, et al.
Publicado: (2016)

A Bayesian framework for estimating the risk ratio of hospitalization for people with comorbidity infected by SARS-CoV-2 virus
por: Gao, Xiang, et al.
Publicado: (2020)

Emergence of Progressive Mutations in SARS-CoV-2 From a Hematologic Patient With Prolonged Viral Replication
por: Garcia-Vidal, Carolina, et al.
Publicado: (2022)

Novel receptor, mutation, vaccine, and establishment of coping mode for SARS-CoV-2: current status and future
por: Zeng, Zhaomu, et al.
Publicado: (2023)

Genomic Surveillance and Phylodynamic Analyses Reveal the Emergence of Novel Mutations and Co-mutation Patterns Within SARS-CoV-2 Variants Prevalent in India
por: Biswas, Nupur, et al.
Publicado: (2021)

On the origin and continuing evolution of SARS-CoV-2
por: Tang, Xiaolu, et al.
Publicado: (2020)

Characteristics of 24 SARS-CoV-2-Sequenced Reinfection Cases in a Tertiary Hospital in Spain
por: Borras-Bermejo, Blanca, et al.
Publicado: (2022)

Systematic benchmarking of nanopore Q20+ kit in SARS-CoV-2 whole genome sequencing
por: Luo, Junhong, et al.
Publicado: (2022)

Profile of the Intervention Potential of the Phylum Actinobacteria Toward Quorum Sensing and Other Microbial Virulence Strategies
por: Sarveswari, Hema Bhagavathi, et al.
Publicado: (2019)

Editorial: Microbial associates of blood-sucking arthropods and other animals: relevance to their physiology, ecology and evolution
por: Fukatsu, Takema, et al.
Publicado: (2023)

On the Use of Diversity Measures in Longitudinal Sequencing Studies of Microbial Communities
por: Wagner, Brandie D., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_ijqj53d7181n2kiau88cpd0buj