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Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma

Background: The immune system plays an important role in the development of lung squamous cell carcinoma (LUSC). Therefore, immune-related genes (IRGs) expression may be an important predictor of LUSC prognosis. However, a prognostic model based on IRGs that can systematically assess the prognosis o...

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Autores principales: Liu, Zeyu, Wan, Yuxiang, Qiu, Yuqin, Qi, Xuewei, Yang, Ming, Huang, Jinchang, Zhang, Qiaoli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7330657/
https://www.ncbi.nlm.nih.gov/pubmed/32624696
http://dx.doi.org/10.7150/ijms.47301
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author Liu, Zeyu
Wan, Yuxiang
Qiu, Yuqin
Qi, Xuewei
Yang, Ming
Huang, Jinchang
Zhang, Qiaoli
author_facet Liu, Zeyu
Wan, Yuxiang
Qiu, Yuqin
Qi, Xuewei
Yang, Ming
Huang, Jinchang
Zhang, Qiaoli
author_sort Liu, Zeyu
collection PubMed
description Background: The immune system plays an important role in the development of lung squamous cell carcinoma (LUSC). Therefore, immune-related genes (IRGs) expression may be an important predictor of LUSC prognosis. However, a prognostic model based on IRGs that can systematically assess the prognosis of LUSC patients is still lacking. This study aimed to construct a LUSC immune-related prognostic model by using IRGs. Methods: Gene expression data about LUSC were obtained from The Cancer Genome Atlas (TCGA). Differential expression analysis and univariate Cox regression analysis were performed to identify prognostic differentially expressed IRGs. A prognostic model was constructed using the Lasso and multivariate Cox regression analyses. Then we validated the performance of the prognostic model in training and test cohorts. Furthermore, associations with clinical variables and immune infiltration were also analyzed. Results: 593 differentially expressed IRGs were identified, and 8 of them were related to prognosis. Then a transcription factor regulatory network was established. A prognostic model consisted of 4 immune-related genes was constructed by using Lasso and multivariate Cox regression analyses. The prognostic value of this model was successfully validated in training and test cohorts. Further analysis showed that the prognostic model could be used independently to predict the prognosis of LUSC patients. The relationships between the risk score and immune cell infiltration indicated that the model could reflect the status of the tumor immune microenvironment. Conclusions: We constructed a risk model using four PDIRGs that can accurately predict the prognosis of LUSC patients. The risk score generated by this model can be used as an independent prognostic indicator. Moreover, the model can predict the infiltration of immune cells in patients, which is conducive to the prediction of patient sensitivity to immunotherapy.
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spelling pubmed-73306572020-07-02 Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma Liu, Zeyu Wan, Yuxiang Qiu, Yuqin Qi, Xuewei Yang, Ming Huang, Jinchang Zhang, Qiaoli Int J Med Sci Research Paper Background: The immune system plays an important role in the development of lung squamous cell carcinoma (LUSC). Therefore, immune-related genes (IRGs) expression may be an important predictor of LUSC prognosis. However, a prognostic model based on IRGs that can systematically assess the prognosis of LUSC patients is still lacking. This study aimed to construct a LUSC immune-related prognostic model by using IRGs. Methods: Gene expression data about LUSC were obtained from The Cancer Genome Atlas (TCGA). Differential expression analysis and univariate Cox regression analysis were performed to identify prognostic differentially expressed IRGs. A prognostic model was constructed using the Lasso and multivariate Cox regression analyses. Then we validated the performance of the prognostic model in training and test cohorts. Furthermore, associations with clinical variables and immune infiltration were also analyzed. Results: 593 differentially expressed IRGs were identified, and 8 of them were related to prognosis. Then a transcription factor regulatory network was established. A prognostic model consisted of 4 immune-related genes was constructed by using Lasso and multivariate Cox regression analyses. The prognostic value of this model was successfully validated in training and test cohorts. Further analysis showed that the prognostic model could be used independently to predict the prognosis of LUSC patients. The relationships between the risk score and immune cell infiltration indicated that the model could reflect the status of the tumor immune microenvironment. Conclusions: We constructed a risk model using four PDIRGs that can accurately predict the prognosis of LUSC patients. The risk score generated by this model can be used as an independent prognostic indicator. Moreover, the model can predict the infiltration of immune cells in patients, which is conducive to the prediction of patient sensitivity to immunotherapy. Ivyspring International Publisher 2020-06-01 /pmc/articles/PMC7330657/ /pubmed/32624696 http://dx.doi.org/10.7150/ijms.47301 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Liu, Zeyu
Wan, Yuxiang
Qiu, Yuqin
Qi, Xuewei
Yang, Ming
Huang, Jinchang
Zhang, Qiaoli
Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
title Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
title_full Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
title_fullStr Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
title_full_unstemmed Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
title_short Development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
title_sort development and validation of a novel immune-related prognostic model in lung squamous cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7330657/
https://www.ncbi.nlm.nih.gov/pubmed/32624696
http://dx.doi.org/10.7150/ijms.47301
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