Cargando…

Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures

Genetics researchers and clinical professionals rely on diversity measures such as race, ethnicity, and ancestry (REA) to stratify study participants and patients for a variety of applications in research and precision medicine. However, there are no comprehensive, widely accepted standards or guide...

Descripción completa

Detalles Bibliográficos
Autores principales: Popejoy, Alice B., Crooks, Kristy R., Fullerton, Stephanie M., Hindorff, Lucia A., Hooker, Gillian W., Koenig, Barbara A., Pino, Natalie, Ramos, Erin M., Ritter, Deborah I., Wand, Hannah, Wright, Matt W., Yudell, Michael, Zou, James Y., Plon, Sharon E., Bustamante, Carlos D., Ormond, Kelly E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7332657/
https://www.ncbi.nlm.nih.gov/pubmed/32504544
http://dx.doi.org/10.1016/j.ajhg.2020.05.005
_version_ 1783553565774577664
author Popejoy, Alice B.
Crooks, Kristy R.
Fullerton, Stephanie M.
Hindorff, Lucia A.
Hooker, Gillian W.
Koenig, Barbara A.
Pino, Natalie
Ramos, Erin M.
Ritter, Deborah I.
Wand, Hannah
Wright, Matt W.
Yudell, Michael
Zou, James Y.
Plon, Sharon E.
Bustamante, Carlos D.
Ormond, Kelly E.
author_facet Popejoy, Alice B.
Crooks, Kristy R.
Fullerton, Stephanie M.
Hindorff, Lucia A.
Hooker, Gillian W.
Koenig, Barbara A.
Pino, Natalie
Ramos, Erin M.
Ritter, Deborah I.
Wand, Hannah
Wright, Matt W.
Yudell, Michael
Zou, James Y.
Plon, Sharon E.
Bustamante, Carlos D.
Ormond, Kelly E.
author_sort Popejoy, Alice B.
collection PubMed
description Genetics researchers and clinical professionals rely on diversity measures such as race, ethnicity, and ancestry (REA) to stratify study participants and patients for a variety of applications in research and precision medicine. However, there are no comprehensive, widely accepted standards or guidelines for collecting and using such data in clinical genetics practice. Two NIH-funded research consortia, the Clinical Genome Resource (ClinGen) and Clinical Sequencing Evidence-generating Research (CSER), have partnered to address this issue and report how REA are currently collected, conceptualized, and used. Surveying clinical genetics professionals and researchers (n = 448), we found heterogeneity in the way REA are perceived, defined, and measured, with variation in the perceived importance of REA in both clinical and research settings. The majority of respondents (>55%) felt that REA are at least somewhat important for clinical variant interpretation, ordering genetic tests, and communicating results to patients. However, there was no consensus on the relevance of REA, including how each of these measures should be used in different scenarios and what information they can convey in the context of human genetics. A lack of common definitions and applications of REA across the precision medicine pipeline may contribute to inconsistencies in data collection, missing or inaccurate classifications, and misleading or inconclusive results. Thus, our findings support the need for standardization and harmonization of REA data collection and use in clinical genetics and precision health research.
format Online
Article
Text
id pubmed-7332657
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-73326572020-10-09 Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures Popejoy, Alice B. Crooks, Kristy R. Fullerton, Stephanie M. Hindorff, Lucia A. Hooker, Gillian W. Koenig, Barbara A. Pino, Natalie Ramos, Erin M. Ritter, Deborah I. Wand, Hannah Wright, Matt W. Yudell, Michael Zou, James Y. Plon, Sharon E. Bustamante, Carlos D. Ormond, Kelly E. Am J Hum Genet Article Genetics researchers and clinical professionals rely on diversity measures such as race, ethnicity, and ancestry (REA) to stratify study participants and patients for a variety of applications in research and precision medicine. However, there are no comprehensive, widely accepted standards or guidelines for collecting and using such data in clinical genetics practice. Two NIH-funded research consortia, the Clinical Genome Resource (ClinGen) and Clinical Sequencing Evidence-generating Research (CSER), have partnered to address this issue and report how REA are currently collected, conceptualized, and used. Surveying clinical genetics professionals and researchers (n = 448), we found heterogeneity in the way REA are perceived, defined, and measured, with variation in the perceived importance of REA in both clinical and research settings. The majority of respondents (>55%) felt that REA are at least somewhat important for clinical variant interpretation, ordering genetic tests, and communicating results to patients. However, there was no consensus on the relevance of REA, including how each of these measures should be used in different scenarios and what information they can convey in the context of human genetics. A lack of common definitions and applications of REA across the precision medicine pipeline may contribute to inconsistencies in data collection, missing or inaccurate classifications, and misleading or inconclusive results. Thus, our findings support the need for standardization and harmonization of REA data collection and use in clinical genetics and precision health research. Elsevier 2020-07-02 2020-06-06 /pmc/articles/PMC7332657/ /pubmed/32504544 http://dx.doi.org/10.1016/j.ajhg.2020.05.005 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Popejoy, Alice B.
Crooks, Kristy R.
Fullerton, Stephanie M.
Hindorff, Lucia A.
Hooker, Gillian W.
Koenig, Barbara A.
Pino, Natalie
Ramos, Erin M.
Ritter, Deborah I.
Wand, Hannah
Wright, Matt W.
Yudell, Michael
Zou, James Y.
Plon, Sharon E.
Bustamante, Carlos D.
Ormond, Kelly E.
Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures
title Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures
title_full Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures
title_fullStr Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures
title_full_unstemmed Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures
title_short Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures
title_sort clinical genetics lacks standard definitions and protocols for the collection and use of diversity measures
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7332657/
https://www.ncbi.nlm.nih.gov/pubmed/32504544
http://dx.doi.org/10.1016/j.ajhg.2020.05.005
work_keys_str_mv AT popejoyaliceb clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT crookskristyr clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT fullertonstephaniem clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT hindorffluciaa clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT hookergillianw clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT koenigbarbaraa clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT pinonatalie clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT ramoserinm clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT ritterdeborahi clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT wandhannah clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT wrightmattw clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT yudellmichael clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT zoujamesy clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT plonsharone clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT bustamantecarlosd clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT ormondkellye clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures
AT clinicalgeneticslacksstandarddefinitionsandprotocolsforthecollectionanduseofdiversitymeasures