Cargando…
Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo
During the exploration of microbial natural resources, two strains of Pseudomonas, PS14(T) and PS24(T), were isolated from samples taken from Izu Oshima, a volcanic island located 120 km southwest of central Tokyo. Phylogenetic analysis based on 16S rRNA gene sequences showed that PS14(T) was most s...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7334251/ https://www.ncbi.nlm.nih.gov/pubmed/32189049 http://dx.doi.org/10.1007/s00284-020-01943-2 |
_version_ | 1783553900736937984 |
---|---|
author | Morimoto, Yuh Uwabe, Kazuki Tohya, Mari Hiramatsu, Keiichi Kirikae, Teruo Baba, Tadashi |
author_facet | Morimoto, Yuh Uwabe, Kazuki Tohya, Mari Hiramatsu, Keiichi Kirikae, Teruo Baba, Tadashi |
author_sort | Morimoto, Yuh |
collection | PubMed |
description | During the exploration of microbial natural resources, two strains of Pseudomonas, PS14(T) and PS24(T), were isolated from samples taken from Izu Oshima, a volcanic island located 120 km southwest of central Tokyo. Phylogenetic analysis based on 16S rRNA gene sequences showed that PS14(T) was most similar to Pseudomonas baetica a390(T) (99.6%) and Pseudomonas helmanticensis OHA11(T) (99.5%), and that PS24(T) was most similar to Pseudomonas qingdaonensis JJ3(T) (98.8%) and Pseudomonas lutea OK2(T) (98.7%). The major fatty acids of these two strains were C(16:0) and C(17:0) cyclo, summed feature 3 (C(16:1) ω6c and/or C(16:1) ω7c), and summed feature 8 (C(18:1) ω7c and/or (18:1) ω6c). The phylogenetic analyses, DNA-DNA hybridization results and phenotypic traits indicated that PS14(T) and PS24(T) constitute two novel species, Pseudomonas atagosis sp. nov. (type strain PS14(T) = CECT 9940(T), = LMG 31496(T)) and Pseudomonas akappagea sp. nov. (type strain PS24(T) = CECT 9941(T), = LMG 31497(T)), respectively. The sequence data of the draft genomes of PS14(T) and PS24(T) were deposited in the GenBank database under accession numbers VXCA00000000 and VXCP00000000, respectively, and the sequence data of their 16S rRNA genes were deposited in the GenBank database under accession numbers MN396717 and MN382268, respectively. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00284-020-01943-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-7334251 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-73342512020-07-09 Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo Morimoto, Yuh Uwabe, Kazuki Tohya, Mari Hiramatsu, Keiichi Kirikae, Teruo Baba, Tadashi Curr Microbiol Article During the exploration of microbial natural resources, two strains of Pseudomonas, PS14(T) and PS24(T), were isolated from samples taken from Izu Oshima, a volcanic island located 120 km southwest of central Tokyo. Phylogenetic analysis based on 16S rRNA gene sequences showed that PS14(T) was most similar to Pseudomonas baetica a390(T) (99.6%) and Pseudomonas helmanticensis OHA11(T) (99.5%), and that PS24(T) was most similar to Pseudomonas qingdaonensis JJ3(T) (98.8%) and Pseudomonas lutea OK2(T) (98.7%). The major fatty acids of these two strains were C(16:0) and C(17:0) cyclo, summed feature 3 (C(16:1) ω6c and/or C(16:1) ω7c), and summed feature 8 (C(18:1) ω7c and/or (18:1) ω6c). The phylogenetic analyses, DNA-DNA hybridization results and phenotypic traits indicated that PS14(T) and PS24(T) constitute two novel species, Pseudomonas atagosis sp. nov. (type strain PS14(T) = CECT 9940(T), = LMG 31496(T)) and Pseudomonas akappagea sp. nov. (type strain PS24(T) = CECT 9941(T), = LMG 31497(T)), respectively. The sequence data of the draft genomes of PS14(T) and PS24(T) were deposited in the GenBank database under accession numbers VXCA00000000 and VXCP00000000, respectively, and the sequence data of their 16S rRNA genes were deposited in the GenBank database under accession numbers MN396717 and MN382268, respectively. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00284-020-01943-2) contains supplementary material, which is available to authorized users. Springer US 2020-03-18 2020 /pmc/articles/PMC7334251/ /pubmed/32189049 http://dx.doi.org/10.1007/s00284-020-01943-2 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Morimoto, Yuh Uwabe, Kazuki Tohya, Mari Hiramatsu, Keiichi Kirikae, Teruo Baba, Tadashi Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo |
title | Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo |
title_full | Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo |
title_fullStr | Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo |
title_full_unstemmed | Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo |
title_short | Pseudomonas atagosis sp. nov., and Pseudomonas akappagea sp. nov., New Soil Bacteria Isolated from Samples on the Volcanic Island Izu Oshima, Tokyo |
title_sort | pseudomonas atagosis sp. nov., and pseudomonas akappagea sp. nov., new soil bacteria isolated from samples on the volcanic island izu oshima, tokyo |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7334251/ https://www.ncbi.nlm.nih.gov/pubmed/32189049 http://dx.doi.org/10.1007/s00284-020-01943-2 |
work_keys_str_mv | AT morimotoyuh pseudomonasatagosisspnovandpseudomonasakappageaspnovnewsoilbacteriaisolatedfromsamplesonthevolcanicislandizuoshimatokyo AT uwabekazuki pseudomonasatagosisspnovandpseudomonasakappageaspnovnewsoilbacteriaisolatedfromsamplesonthevolcanicislandizuoshimatokyo AT tohyamari pseudomonasatagosisspnovandpseudomonasakappageaspnovnewsoilbacteriaisolatedfromsamplesonthevolcanicislandizuoshimatokyo AT hiramatsukeiichi pseudomonasatagosisspnovandpseudomonasakappageaspnovnewsoilbacteriaisolatedfromsamplesonthevolcanicislandizuoshimatokyo AT kirikaeteruo pseudomonasatagosisspnovandpseudomonasakappageaspnovnewsoilbacteriaisolatedfromsamplesonthevolcanicislandizuoshimatokyo AT babatadashi pseudomonasatagosisspnovandpseudomonasakappageaspnovnewsoilbacteriaisolatedfromsamplesonthevolcanicislandizuoshimatokyo |