Insight in the transcriptome data of hairy root disease-causing bacterium-Agrobacterium rhizogenes

Agrobacterium rhizogenes induce the production of the hairy root through the transformation of plant genomes. In this article, we executed the transcriptome of A. rhizogenes through RNA-sequencing. RNA-sequencing of A. rhizogenes generated a total of 2.6 Gb raw data with a 75 bp paired-end sequence....

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Detalles Bibliográficos
Autores principales: Yadav, Akhilesh, Verma, Hariom, Ansari, Waquar Akhter, Singh, Asha Lata, Singh, Major
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Agricultural and Biological Science
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7334392/
https://www.ncbi.nlm.nih.gov/pubmed/32642520
http://dx.doi.org/10.1016/j.dib.2020.105910
Descripción
Sumario:Agrobacterium rhizogenes induce the production of the hairy root through the transformation of plant genomes. In this article, we executed the transcriptome of A. rhizogenes through RNA-sequencing. RNA-sequencing of A. rhizogenes generated a total of 2.6 Gb raw data with a 75 bp paired-end sequence. The raw data has been submitted to the SRA database of NCBI with accession number SRR5641651. Reads were generated 2946 unigenes and all unigenes were annotated in the database. The length of transcripts ranged from 90 to 6369 bp, with a median transcript length of 968. The transcripts were annotated through the number of databases to obtain information about SSRs, SNPs, Gene Ontology, Transcription factors, and pathways analysis .

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