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Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer
Ferroptosis is a type of cell death related to cancer; however, the characteristics of ferroptosis in cancers are still uncertain. Based on the data in The Cancer Genome Atlas, we found that most ferroptosis regulator genes (FRGs) were differentially expressed in tumors, somatic copy number alterati...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7334617/ https://www.ncbi.nlm.nih.gov/pubmed/32629423 http://dx.doi.org/10.1016/j.isci.2020.101302 |
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author | Liu, Zekun Zhao, Qi Zuo, Zhi-Xiang Yuan, Shu-Qiang Yu, Kai Zhang, Qingfeng Zhang, Xiaolong Sheng, Hui Ju, Huai-Qiang Cheng, Han Wang, Feng Xu, Rui-Hua Liu, Ze-Xian |
author_facet | Liu, Zekun Zhao, Qi Zuo, Zhi-Xiang Yuan, Shu-Qiang Yu, Kai Zhang, Qingfeng Zhang, Xiaolong Sheng, Hui Ju, Huai-Qiang Cheng, Han Wang, Feng Xu, Rui-Hua Liu, Ze-Xian |
author_sort | Liu, Zekun |
collection | PubMed |
description | Ferroptosis is a type of cell death related to cancer; however, the characteristics of ferroptosis in cancers are still uncertain. Based on the data in The Cancer Genome Atlas, we found that most ferroptosis regulator genes (FRGs) were differentially expressed in tumors, somatic copy number alterations (SCNA) and DNA methylation contributed to their aberrant expression. We established the ferroptosis potential index (FPI) to reveal the functional roles of ferroptosis and noticed that the FPI was higher in tumors than in normal tissues in most cancers and was associated with subtypes and clinical features. The FPI was negatively correlated with several metabolic pathways but positively associated with several important metastasis-related pathways and immune-related pathways. High FPI predicted poor prognosis in several tumors, whereas FPI and FRGs impacted drug sensitivity. Our study presents a systematic analysis of ferroptosis and its regulatory genes and highlights the potential of ferroptosis-based cancer therapy. |
format | Online Article Text |
id | pubmed-7334617 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-73346172020-07-07 Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer Liu, Zekun Zhao, Qi Zuo, Zhi-Xiang Yuan, Shu-Qiang Yu, Kai Zhang, Qingfeng Zhang, Xiaolong Sheng, Hui Ju, Huai-Qiang Cheng, Han Wang, Feng Xu, Rui-Hua Liu, Ze-Xian iScience Article Ferroptosis is a type of cell death related to cancer; however, the characteristics of ferroptosis in cancers are still uncertain. Based on the data in The Cancer Genome Atlas, we found that most ferroptosis regulator genes (FRGs) were differentially expressed in tumors, somatic copy number alterations (SCNA) and DNA methylation contributed to their aberrant expression. We established the ferroptosis potential index (FPI) to reveal the functional roles of ferroptosis and noticed that the FPI was higher in tumors than in normal tissues in most cancers and was associated with subtypes and clinical features. The FPI was negatively correlated with several metabolic pathways but positively associated with several important metastasis-related pathways and immune-related pathways. High FPI predicted poor prognosis in several tumors, whereas FPI and FRGs impacted drug sensitivity. Our study presents a systematic analysis of ferroptosis and its regulatory genes and highlights the potential of ferroptosis-based cancer therapy. Elsevier 2020-06-20 /pmc/articles/PMC7334617/ /pubmed/32629423 http://dx.doi.org/10.1016/j.isci.2020.101302 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Liu, Zekun Zhao, Qi Zuo, Zhi-Xiang Yuan, Shu-Qiang Yu, Kai Zhang, Qingfeng Zhang, Xiaolong Sheng, Hui Ju, Huai-Qiang Cheng, Han Wang, Feng Xu, Rui-Hua Liu, Ze-Xian Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer |
title | Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer |
title_full | Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer |
title_fullStr | Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer |
title_full_unstemmed | Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer |
title_short | Systematic Analysis of the Aberrances and Functional Implications of Ferroptosis in Cancer |
title_sort | systematic analysis of the aberrances and functional implications of ferroptosis in cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7334617/ https://www.ncbi.nlm.nih.gov/pubmed/32629423 http://dx.doi.org/10.1016/j.isci.2020.101302 |
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