Cargando…

PARGT: a software tool for predicting antimicrobial resistance in bacteria

With the ever-increasing availability of whole-genome sequences, machine-learning approaches can be used as an alternative to traditional alignment-based methods for identifying new antimicrobial-resistance genes. Such approaches are especially helpful when pathogens cannot be cultured in the lab. I...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chowdhury, Abu Sayed, Call, Douglas R., Broschat, Shira L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7335159/ https://www.ncbi.nlm.nih.gov/pubmed/32620856 http://dx.doi.org/10.1038/s41598-020-67949-9

Ejemplares similares

Antimicrobial Resistance Prediction for Gram-Negative Bacteria via Game Theory-Based Feature Evaluation
por: Chowdhury, Abu Sayed, et al.
Publicado: (2019)

Publisher Correction: Antimicrobial Resistance Prediction for Gram-Negative Bacteria via Game Theory-Based Feature Evaluation
por: Chowdhury, Abu Sayed, et al.
Publicado: (2020)

A Java-based tool for the design of classification microarrays
por: Meng, Da, et al.
Publicado: (2008)

Prediction of T4SS Effector Proteins for Anaplasma phagocytophilum Using OPT4e, A New Software Tool
por: Esna Ashari, Zhila, et al.
Publicado: (2019)

Using Protein Clusters from Whole Proteomes to Construct and Augment a Dendrogram
por: Zhou, Yunyun, et al.
Publicado: (2013)

Whole-Proteome Analysis of Twelve Species of Alphaproteobacteria Links Four Pathogens
por: Zhou, Yunyun, et al.
Publicado: (2013)

Estimating the population-level prevalence of antimicrobial-resistant enteric bacteria from latrine samples
por: Omulo, Sylvia, et al.
Publicado: (2022)

Using an optimal set of features with a machine learning-based approach to predict effector proteins for Legionella pneumophila
por: Esna Ashari, Zhila, et al.
Publicado: (2019)

Circumventing colistin resistance by combining colistin and antimicrobial peptides to kill colistin-resistant and multidrug-resistant Gram-negative bacteria
por: Witherell, Kaitlin S., et al.
Publicado: (2020)

Automated Training for Algorithms That Learn from Genomic Data
por: Cilingir, Gokcen, et al.
Publicado: (2015)

A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions
por: Abnousi, Armen, et al.
Publicado: (2016)

An optimal set of features for predicting type IV secretion system effector proteins for a subset of species based on a multi-level feature selection approach
por: Esna Ashari, Zhila, et al.
Publicado: (2018)

Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing
por: Abnousi, Armen, et al.
Publicado: (2018)

A Systematic Approach to Bacterial Phylogeny Using Order Level Sampling and Identification of HGT Using Network Science
por: Khaledian, Ehdieh, et al.
Publicado: (2020)

ApicoAP: The First Computational Model for Identifying Apicoplast-Targeted Proteins in Multiple Species of Apicomplexa
por: Cilingir, Gokcen, et al.
Publicado: (2012)

Comparative genomics reveals multiple pathways to mutualism for tick-borne pathogens
por: Lockwood, Svetlana, et al.
Publicado: (2016)

PASS: Protein Annotation Surveillance Site for Protein Annotation Using Homologous Clusters, NLP, and Sequence Similarity Networks
por: Tao, Jin, et al.
Publicado: (2021)

Antimicrobial resistant enteric bacteria are widely distributed amongst people, animals and the environment in Tanzania
por: Subbiah, Murugan, et al.
Publicado: (2020)

1277. Colonization Rates for Antimicrobial-resistant Bacteria in Kenya: An Antibiotic Resistance in Communities and Hospitals (ARCH) Study
por: Omulo, Sylvia, et al.
Publicado: (2021)

Towards early software reliability prediction for computer forensic tools (case study)
por: Abu Talib, Manar
Publicado: (2016)

Antibiotic use and hygiene interact to influence the distribution of antimicrobial-resistant bacteria in low-income communities in Guatemala
por: Ramay, Brooke M., et al.
Publicado: (2020)

Risk Factors for Colonization With Multidrug-Resistant Bacteria in Urban and Rural Communities in Kenya: An Antimicrobial Resistance in Communities and Hospitals (ARCH) Study
por: Caudell, Mark A, et al.
Publicado: (2023)

Electroactive Smart Materials: Novel Tools for Tailoring Bacteria Behavior and Fight Antimicrobial Resistance
por: Fernandes, Margarida M., et al.
Publicado: (2019)

Whole Proteome Clustering of 2,307 Proteobacterial Genomes Reveals Conserved Proteins and Significant Annotation Issues
por: Lockwood, Svetlana, et al.
Publicado: (2019)

MALDI-TOF Mass Spectrometry Technology as a Tool for the Rapid Diagnosis of Antimicrobial Resistance in Bacteria
por: Yoon, Eun-Jeong, et al.
Publicado: (2021)

Carriage of antimicrobial-resistant bacteria in a high-density informal settlement in Kenya is associated with environmental risk-factors
por: Omulo, Sylvia, et al.
Publicado: (2021)

Antimicrobial Resistance in Bacteria of Animal Origin
por: Holzbauer, Stacy, et al.
Publicado: (2006)

An overview of the antimicrobial resistance mechanisms of bacteria
por: Reygaert, Wanda C
Publicado: (2018)

Antimicrobial-resistant bacteria in international travelers
por: Sridhar, Sushmita, et al.
Publicado: (2021)

Clinical Perspective of Antimicrobial Resistance in Bacteria
por: Zhu, Ying, et al.
Publicado: (2022)

A two-month follow-up evaluation testing interventions to limit the emergence and spread of antimicrobial resistant bacteria among Maasai of northern Tanzania
por: Roulette, Casey J., et al.
Publicado: (2017)

Antimicrobial-resistant Bacteria Arising from the Use of Colistin Sulfate in the Livestock (2nd edition) (Antimicrobial-resistant Bacteria)
Publicado: (2021)

Software tools
por: Kernighan, Plauger, et al.
Publicado: (1976)

Software quality assurance: integrating testing, security, and audit
por: Mahfuz, Abu Sayed
Publicado: (2016)

Quorum-Sensing Regulation of Antimicrobial Resistance in Bacteria
por: Zhao, Xihong, et al.
Publicado: (2020)

Alignment tools software tools
por: Borghi, S., et al.
Publicado: (2014)

Antimicrobial Drug Use and Antibiotic-Resistant Bacteria
por: Bellissimo-Rodrigues, Fernando
Publicado: (2008)

Vaginal Bacteria in Mares and the Occurrence of Antimicrobial Resistance
por: Malaluang, Pongpreecha, et al.
Publicado: (2022)

Antimicrobial Resistance in Vaginal Bacteria in Inseminated Mares
por: Malaluang, Pongpreecha, et al.
Publicado: (2023)

Editorial: Bacteria-phage coevolution in antimicrobial resistance
por: Yu, Pingfeng, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_1et0avn8e7ctcq5l9d73itpidv