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Quasi-linear Cox proportional hazards model with cross- L(1) penalty
BACKGROUND: To accurately predict the response to treatment, we need a stable and effective risk score that can be calculated from patient characteristics. When we evaluate such risks from time-to-event data with right-censoring, Cox’s proportional hazards model is the most popular for estimating th...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7336640/ https://www.ncbi.nlm.nih.gov/pubmed/32631280 http://dx.doi.org/10.1186/s12874-020-01063-2 |
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author | Omae, Katsuhiro Eguchi, Shinto |
author_facet | Omae, Katsuhiro Eguchi, Shinto |
author_sort | Omae, Katsuhiro |
collection | PubMed |
description | BACKGROUND: To accurately predict the response to treatment, we need a stable and effective risk score that can be calculated from patient characteristics. When we evaluate such risks from time-to-event data with right-censoring, Cox’s proportional hazards model is the most popular for estimating the linear risk score. However, the intrinsic heterogeneity of patients may prevent us from obtaining a valid score. It is therefore insufficient to consider the regression problem with a single linear predictor. METHODS: we propose the model with a quasi-linear predictor that combines several linear predictors. This provides a natural extension of Cox model that leads to a mixture hazards model. We investigate the property of the maximum likelihood estimator for the proposed model. Moreover, we propose two strategies for getting the interpretable estimates. The first is to restrict the model structure in advance, based on unsupervised learning or prior information, and the second is to obtain as parsimonious an expression as possible in the parameter estimation strategy with cross- L(1) penalty. The performance of the proposed method are evaluated by simulation and application studies. RESULTS: We showed that the maximum likelihood estimator has consistency and asymptotic normality, and the cross- L(1)-regularized estimator has root-n consistency. Simulation studies show these properties empirically, and application studies show that the proposed model improves predictive ability relative to Cox model. CONCLUSIONS: It is essential to capture the intrinsic heterogeneity of patients for getting more stable and effective risk score. The proposed hazard model can capture such heterogeneity and achieve better performance than the ordinary linear Cox proportional hazards model. |
format | Online Article Text |
id | pubmed-7336640 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-73366402020-07-08 Quasi-linear Cox proportional hazards model with cross- L(1) penalty Omae, Katsuhiro Eguchi, Shinto BMC Med Res Methodol Research Article BACKGROUND: To accurately predict the response to treatment, we need a stable and effective risk score that can be calculated from patient characteristics. When we evaluate such risks from time-to-event data with right-censoring, Cox’s proportional hazards model is the most popular for estimating the linear risk score. However, the intrinsic heterogeneity of patients may prevent us from obtaining a valid score. It is therefore insufficient to consider the regression problem with a single linear predictor. METHODS: we propose the model with a quasi-linear predictor that combines several linear predictors. This provides a natural extension of Cox model that leads to a mixture hazards model. We investigate the property of the maximum likelihood estimator for the proposed model. Moreover, we propose two strategies for getting the interpretable estimates. The first is to restrict the model structure in advance, based on unsupervised learning or prior information, and the second is to obtain as parsimonious an expression as possible in the parameter estimation strategy with cross- L(1) penalty. The performance of the proposed method are evaluated by simulation and application studies. RESULTS: We showed that the maximum likelihood estimator has consistency and asymptotic normality, and the cross- L(1)-regularized estimator has root-n consistency. Simulation studies show these properties empirically, and application studies show that the proposed model improves predictive ability relative to Cox model. CONCLUSIONS: It is essential to capture the intrinsic heterogeneity of patients for getting more stable and effective risk score. The proposed hazard model can capture such heterogeneity and achieve better performance than the ordinary linear Cox proportional hazards model. BioMed Central 2020-07-06 /pmc/articles/PMC7336640/ /pubmed/32631280 http://dx.doi.org/10.1186/s12874-020-01063-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Omae, Katsuhiro Eguchi, Shinto Quasi-linear Cox proportional hazards model with cross- L(1) penalty |
title | Quasi-linear Cox proportional hazards model with cross- L(1) penalty |
title_full | Quasi-linear Cox proportional hazards model with cross- L(1) penalty |
title_fullStr | Quasi-linear Cox proportional hazards model with cross- L(1) penalty |
title_full_unstemmed | Quasi-linear Cox proportional hazards model with cross- L(1) penalty |
title_short | Quasi-linear Cox proportional hazards model with cross- L(1) penalty |
title_sort | quasi-linear cox proportional hazards model with cross- l(1) penalty |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7336640/ https://www.ncbi.nlm.nih.gov/pubmed/32631280 http://dx.doi.org/10.1186/s12874-020-01063-2 |
work_keys_str_mv | AT omaekatsuhiro quasilinearcoxproportionalhazardsmodelwithcrossl1penalty AT eguchishinto quasilinearcoxproportionalhazardsmodelwithcrossl1penalty |