Cargando…

West-Life: A Virtual Research Environment for structural biology

The West-Life project (https://about.west-life.eu/) is a Horizon 2020 project funded by the European Commission to provide data processing and data management services for the international community of structural biologists, and in particular to support integrative experimental approaches within th...

Descripción completa

Detalles Bibliográficos
Autores principales:	Morris, Chris, Andreetto, Paolo, Banci, Lucia, Bonvin, Alexandre M.J.J., Chojnowski, Grzegorz, Cano, Laura del, Carazo, José Marıa, Conesa, Pablo, Daenke, Susan, Damaskos, George, Giachetti, Andrea, Haley, Natalie E.C., Hekkelman, Maarten L., Heuser, Philipp, Joosten, Robbie P., Kouřil, Daniel, Křenek, Aleš, Kulhánek, Tomáš, Lamzin, Victor S., Nadzirin, Nurul, Perrakis, Anastassis, Rosato, Antonio, Sanderson, Fiona, Segura, Joan, Schaarschmidt, Joerg, Sobolev, Egor, Traldi, Sergio, Trellet, Mikael E., Velankar, Sameer, Verlato, Marco, Winn, Martyn
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7337051/ https://www.ncbi.nlm.nih.gov/pubmed/32647812 http://dx.doi.org/10.1016/j.yjsbx.2019.100006

Ejemplares similares

The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP
por: Chojnowski, Grzegorz, et al.
Publicado: (2021)

From SPINE to SPINE-2 complexes and beyond
por: Perrakis, Anastassis, et al.
Publicado: (2011)

LAHMA: structure analysis through local annotation of homology-matched amino acids
por: van Beusekom, Bart, et al.
Publicado: (2021)

New restraints and validation approaches for nucleic acid structures in PDB-REDO
por: de Vries, Ida, et al.
Publicado: (2021)

The use of local structural similarity of distant homologues for crystallographic model building from a molecular-replacement solution
por: Chojnowski, Grzegorz, et al.
Publicado: (2020)

Assessment of automatic ligand building in ARP/wARP
por: Evrard, Guillaume X., et al.
Publicado: (2007)

CCD (2): design constructs for protein expression, the easy way
por: Murachelli, Andrea Giovanni, et al.
Publicado: (2021)

AlphaFill: enriching AlphaFold models with ligands and cofactors
por: Hekkelman, Maarten L., et al.
Publicado: (2022)

Homology-based loop modeling yields more complete crystallographic protein structures
por: van Beusekom, Bart, et al.
Publicado: (2018)

A knowledge-driven approach for crystallographic protein model completion
por: Joosten, Krista, et al.
Publicado: (2008)

Building and rebuilding N-glycans in protein structure models
por: van Beusekom, Bart, et al.
Publicado: (2019)

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem
por: Honorato, Rodrigo V., et al.
Publicado: (2021)

Sequence assignment for low-resolution modelling of protein crystal structures
por: Chojnowski, Grzegorz, et al.
Publicado: (2019)

The Structural Binding Mode of the Four Autotaxin Inhibitor Types that Differentially Affect Catalytic and Non-Catalytic Functions
por: Salgado-Polo, Fernando, et al.
Publicado: (2019)

AI revolutions in biology: The joys and perils of AlphaFold
por: Perrakis, Anastassis, et al.
Publicado: (2021)

ARP/wARP and molecular replacement: the next generation
por: Cohen, Serge X., et al.
Publicado: (2008)

Contacts-based prediction of binding affinity in protein–protein complexes
por: Vangone, Anna, et al.
Publicado: (2015)

A Unified Conformational Selection and Induced Fit Approach to Protein-Peptide Docking
por: Trellet, Mikael, et al.
Publicado: (2013)

ProteinCCD: enabling the design of protein truncation constructs for expression and crystallization experiments
por: Mooij, Wijnand T. M., et al.
Publicado: (2009)

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)
por: Orengo, Christine, et al.
Publicado: (2020)

Interpretation of very low resolution X-ray electron-density maps using core objects
por: Heuser, Philipp, et al.
Publicado: (2009)

Coarse-grained (hybrid) integrative modeling of biomolecular interactions
por: Roel-Touris, Jorge, et al.
Publicado: (2020)

PDB_REDO: constructive validation, more than just looking for errors
por: Joosten, Robbie P., et al.
Publicado: (2012)

The PDB_REDO server for macromolecular structure model optimization
por: Joosten, Robbie P., et al.
Publicado: (2014)

A crystal structure of the human protein kinase Mps1 reveals an ordered conformation of the activation loop
por: Roorda, Jacomina C., et al.
Publicado: (2019)

Structure and function of the ecto-nucleotide pyrophosphatase/phosphodiesterase (ENPP) family: Tidying up diversity
por: Borza, Razvan, et al.
Publicado: (2021)

Nemesis - a molecular modeling package
por: Štěpán, Jakub, et al.
Publicado: (2013)

Insights into the Dynamics of the Human Zinc Transporter ZnT8 by MD Simulations
por: Sala, Davide, et al.
Publicado: (2021)

SAMPLEX: Automatic mapping of perturbed and unperturbed regions of proteins and complexes
por: Krzeminski, Mickaël, et al.
Publicado: (2010)

Timely deposition of macromolecular structures is necessary for peer review
por: Joosten, Robbie P., et al.
Publicado: (2013)

A type IV Autotaxin inhibitor ameliorates acute liver injury and nonalcoholic steatohepatitis
por: Booijink, Richell, et al.
Publicado: (2022)

The Relationship between Environmental Dioxygen and Iron-Sulfur Proteins Explored at the Genome Level
por: Andreini, Claudia, et al.
Publicado: (2017)

Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank
por: Joosten, Robbie P., et al.
Publicado: (2011)

Assessment of contact predictions in CASP12: Co‐evolution and deep learning coming of age
por: Schaarschmidt, Joerg, et al.
Publicado: (2017)

A Comparison of Bonded and Nonbonded Zinc(II) Force Fields with NMR Data
por: Bazayeva, Milana, et al.
Publicado: (2023)

pdb-tools: a swiss army knife for molecular structures
por: Rodrigues, João P. G. L. M., et al.
Publicado: (2018)

The structure of the GemC1 coiled coil and its interaction with the Geminin family of coiled-coil proteins
por: Caillat, Christophe, et al.
Publicado: (2015)

Determinants for DNA target structure selectivity of the human LINE-1 retrotransposon endonuclease
por: Repanas, Kostas, et al.
Publicado: (2007)

“Conditional Restraints”: Restraining the Free Atoms in ARP/wARP
por: Mooij, Wijnand T.M., et al.
Publicado: (2009)

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data
por: Nair, Sreenath, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_lcvb3o09gbsi2fnjgq7t9lo88v