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Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China

Background: A novel coronavirus disease (COVID-19) outbreak has now spread to a number of countries worldwide. While sustained transmission chains of human-to-human transmission suggest high basic reproduction number R (0), variation in the number of secondary transmissions (often characterised by s...

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Autores principales: Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7338915/
https://www.ncbi.nlm.nih.gov/pubmed/32685698
http://dx.doi.org/10.12688/wellcomeopenres.15842.3
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author Endo, Akira
Abbott, Sam
Kucharski, Adam J.
Funk, Sebastian
author_facet Endo, Akira
Abbott, Sam
Kucharski, Adam J.
Funk, Sebastian
author_sort Endo, Akira
collection PubMed
description Background: A novel coronavirus disease (COVID-19) outbreak has now spread to a number of countries worldwide. While sustained transmission chains of human-to-human transmission suggest high basic reproduction number R (0), variation in the number of secondary transmissions (often characterised by so-called superspreading events) may be large as some countries have observed fewer local transmissions than others. Methods: We quantified individual-level variation in COVID-19 transmission by applying a mathematical model to observed outbreak sizes in affected countries. We extracted the number of imported and local cases in the affected countries from the World Health Organization situation report and applied a branching process model where the number of secondary transmissions was assumed to follow a negative-binomial distribution. Results: Our model suggested a high degree of individual-level variation in the transmission of COVID-19. Within the current consensus range of R (0) (2-3), the overdispersion parameter k of a negative-binomial distribution was estimated to be around 0.1 (median estimate 0.1; 95% CrI: 0.05-0.2 for R0 = 2.5), suggesting that 80% of secondary transmissions may have been caused by a small fraction of infectious individuals (~10%). A joint estimation yielded likely ranges for R (0) and k (95% CrIs: R (0) 1.4-12; k 0.04-0.2); however, the upper bound of R (0) was not well informed by the model and data, which did not notably differ from that of the prior distribution. Conclusions: Our finding of a highly-overdispersed offspring distribution highlights a potential benefit to focusing intervention efforts on superspreading. As most infected individuals do not contribute to the expansion of an epidemic, the effective reproduction number could be drastically reduced by preventing relatively rare superspreading events.
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spelling pubmed-73389152020-07-16 Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China Endo, Akira Abbott, Sam Kucharski, Adam J. Funk, Sebastian Wellcome Open Res Research Article Background: A novel coronavirus disease (COVID-19) outbreak has now spread to a number of countries worldwide. While sustained transmission chains of human-to-human transmission suggest high basic reproduction number R (0), variation in the number of secondary transmissions (often characterised by so-called superspreading events) may be large as some countries have observed fewer local transmissions than others. Methods: We quantified individual-level variation in COVID-19 transmission by applying a mathematical model to observed outbreak sizes in affected countries. We extracted the number of imported and local cases in the affected countries from the World Health Organization situation report and applied a branching process model where the number of secondary transmissions was assumed to follow a negative-binomial distribution. Results: Our model suggested a high degree of individual-level variation in the transmission of COVID-19. Within the current consensus range of R (0) (2-3), the overdispersion parameter k of a negative-binomial distribution was estimated to be around 0.1 (median estimate 0.1; 95% CrI: 0.05-0.2 for R0 = 2.5), suggesting that 80% of secondary transmissions may have been caused by a small fraction of infectious individuals (~10%). A joint estimation yielded likely ranges for R (0) and k (95% CrIs: R (0) 1.4-12; k 0.04-0.2); however, the upper bound of R (0) was not well informed by the model and data, which did not notably differ from that of the prior distribution. Conclusions: Our finding of a highly-overdispersed offspring distribution highlights a potential benefit to focusing intervention efforts on superspreading. As most infected individuals do not contribute to the expansion of an epidemic, the effective reproduction number could be drastically reduced by preventing relatively rare superspreading events. F1000 Research Limited 2020-07-10 /pmc/articles/PMC7338915/ /pubmed/32685698 http://dx.doi.org/10.12688/wellcomeopenres.15842.3 Text en Copyright: © 2020 Endo A et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Endo, Akira
Abbott, Sam
Kucharski, Adam J.
Funk, Sebastian
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China
title Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China
title_full Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China
title_fullStr Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China
title_full_unstemmed Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China
title_short Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China
title_sort estimating the overdispersion in covid-19 transmission using outbreak sizes outside china
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7338915/
https://www.ncbi.nlm.nih.gov/pubmed/32685698
http://dx.doi.org/10.12688/wellcomeopenres.15842.3
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