Cargando…

Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

BACKGROUND: Efforts to improve animal health, and understand genetic bases for production, may benefit from a comprehensive analysis of animal genomes and epigenomes. Although DNA methylation has been well studied in humans and other model species, its distribution patterns and regulatory impacts in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhou, Yang, Liu, Shuli, Hu, Yan, Fang, Lingzhao, Gao, Yahui, Xia, Han, Schroeder, Steven G., Rosen, Benjamin D., Connor, Erin E., Li, Cong-jun, Baldwin, Ransom L., Cole, John B., Van Tassell, Curtis P., Yang, Liguo, Ma, Li, Liu, George E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2020
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7339546/ https://www.ncbi.nlm.nih.gov/pubmed/32631327 http://dx.doi.org/10.1186/s12915-020-00793-5

Ejemplares similares

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm
por: Zhou, Yang, et al.
Publicado: (2018)

Differentially CTCF-Binding Sites in Cattle Rumen Tissue during Weaning
por: Boschiero, Clarissa, et al.
Publicado: (2022)

Establishment and transcriptomic analyses of a cattle rumen epithelial primary cells (REPC) culture by bulk and single-cell RNA sequencing to elucidate interactions of butyrate and rumen development
por: Lin, Shudai, et al.
Publicado: (2020)

Characterization of Accessible Chromatin Regions in Cattle Rumen Epithelial Tissue during Weaning
por: Boschiero, Clarissa, et al.
Publicado: (2022)

Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
por: Fang, Lingzhao, et al.
Publicado: (2019)

A multi-tissue atlas of regulatory variants in cattle
por: Liu, Shuli, et al.
Publicado: (2022)

Analyses of inter-individual variations of sperm DNA methylation and their potential implications in cattle
por: Liu, Shuli, et al.
Publicado: (2019)

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits
por: Fang, Lingzhao, et al.
Publicado: (2019)

Integrating Signals from Sperm Methylome Analysis and Genome-Wide Association Study for a Better Understanding of Male Fertility in Cattle
por: Fang, Lingzhao, et al.
Publicado: (2019)

Genome-wide recombination map construction from single sperm sequencing in cattle
por: Yang, Liu, et al.
Publicado: (2022)

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression
por: Zhou, Yang, et al.
Publicado: (2016)

Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
por: Fang, Lingzhao, et al.
Publicado: (2020)

Butyrate Induces Modifications of the CTCF-Binding Landscape in Cattle Cells
por: Boschiero, Clarissa, et al.
Publicado: (2022)

Towards the detection of copy number variation from single sperm sequencing in cattle
por: Yang, Liu, et al.
Publicado: (2022)

Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide
por: Gao, Yahui, et al.
Publicado: (2022)

Data of epigenomic profiling of histone marks and CTCF binding sites in bovine rumen epithelial primary cells before and after butyrate treatment
por: Kang, Xiaolong, et al.
Publicado: (2019)

Transcriptional Reprogramming in Rumen Epithelium during the Developmental Transition of Pre-Ruminant to the Ruminant in Cattle
por: Baldwin VI, Ransom L., et al.
Publicado: (2021)

Investigation of rumen long noncoding RNA before and after weaning in cattle
por: Marceau, Alexis, et al.
Publicado: (2022)

The Profiling of DNA Methylation and Its Regulation on Divergent Tenderness in Angus Beef Cattle
por: Zhao, Chunping, et al.
Publicado: (2020)

Global Landscape of m6A Methylation of Differently Expressed Genes in Muscle Tissue of Liaoyu White Cattle and Simmental Cattle
por: Dang, Yunlong, et al.
Publicado: (2022)

Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human
por: Liu, Shuli, et al.
Publicado: (2020)

Transcriptomic Impacts of Rumen Epithelium Induced by Butyrate Infusion in Dairy Cattle in Dry Period
por: Baldwin, Ransom L, et al.
Publicado: (2018)

Genome-Wide Acetylation Modification of H3K27ac in Bovine Rumen Cell Following Butyrate Exposure
por: Kang, Xiaolong, et al.
Publicado: (2023)

Comparative transcriptome in large-scale human and cattle populations
por: Yao, Yuelin, et al.
Publicado: (2022)

A Multi-Tissue Gene Expression Atlas of Water Buffalo (Bubalus bubalis) Reveals Transcriptome Conservation between Buffalo and Cattle
por: Si, Jingfang, et al.
Publicado: (2023)

Inter-Individual Variation in DNA Methylation Patterns across Two Tissues and Leukocytes in Mature Brahman Cattle
por: Baker, Emilie C., et al.
Publicado: (2023)

Gene expression and RNA splicing explain large proportions of the heritability for complex traits in cattle
por: Xiang, Ruidong, et al.
Publicado: (2023)

Analysis of DNA Methylation in Various Swine Tissues
por: Yang, Chun, et al.
Publicado: (2011)

Tissue-independent and tissue-specific patterns of DNA methylation alteration in cancer
por: Chen, Yuting, et al.
Publicado: (2016)

Genetic and epigenetic architecture of paternal origin contribute to gestation length in cattle
por: Fang, Lingzhao, et al.
Publicado: (2019)

DNA methylation, microRNA expression profiles and their relationships with transcriptome in grass-fed and grain-fed Angus cattle rumen tissue
por: Li, Yaokun, et al.
Publicado: (2019)

Genome changes due to artificial selection in U.S. Holstein cattle
por: Ma, Li, et al.
Publicado: (2019)

Methylation Patterns of the IFN-γ Gene in Cervical Cancer Tissues
por: Ma, Dong, et al.
Publicado: (2014)

Whole Genome DNA Methylation Variations in Mammary Gland Tissues from Holstein Cattle Producing Milk with Various Fat and Protein Contents
por: Wang, Mengqi, et al.
Publicado: (2021)

Regulation of DNA methylation on EEF1D and RPL8 expression in cattle
por: Liu, Xuan, et al.
Publicado: (2017)

Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history
por: Zhou, Yang, et al.
Publicado: (2022)

Transcriptomic Profiling of Duodenal Epithelium Reveals Temporally Dynamic Impacts of Direct Duodenal Starch-Infusion During Dry Period of Dairy Cattle
por: Li, Cong-Jun, et al.
Publicado: (2019)

Pancreatic cancer differential methylation atlas in blood, peri-carcinomatous and diseased tissue
por: Wang, Huan, et al.
Publicado: (2020)

DNA methylation in peripheral tissues and left-handedness
por: Odintsova, Veronika V., et al.
Publicado: (2022)

A whole lifespan mouse multi-tissue DNA methylation clock
por: Meer, Margarita V, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_4onudhagpduoht86l9326lnk9u