Cargando…

Meta-analysis for milk fat and protein percentage using imputed sequence variant genotypes in 94,321 cattle from eight cattle breeds

BACKGROUND: Sequence-based genome-wide association studies (GWAS) provide high statistical power to identify candidate causal mutations when a large number of individuals with both sequence variant genotypes and phenotypes is available. A meta-analysis combines summary statistics from multiple GWAS...

Descripción completa

Detalles Bibliográficos
Autores principales:	van den Berg, Irene, Xiang, Ruidong, Jenko, Janez, Pausch, Hubert, Boussaha, Mekki, Schrooten, Chris, Tribout, Thierry, Gjuvsland, Arne B., Boichard, Didier, Nordbø, Øyvind, Sanchez, Marie-Pierre, Goddard, Mike E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2020
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7339598/ https://www.ncbi.nlm.nih.gov/pubmed/32635893 http://dx.doi.org/10.1186/s12711-020-00556-4

Ejemplares similares

Correcting for base-population differences and unknown parent groups in single-step genomic predictions of Norwegian Red cattle
por: Belay, Tesfaye K, et al.
Publicado: (2022)

Confirmed effects of candidate variants for milk production, udder health, and udder morphology in dairy cattle
por: Tribout, Thierry, et al.
Publicado: (2020)

Imputation of high-density genotypes in the Fleckvieh cattle population
por: Pausch, Hubert, et al.
Publicado: (2013)

Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle
por: Sanchez, Marie-Pierre, et al.
Publicado: (2017)

Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology
por: van den Berg, Irene, et al.
Publicado: (2014)

X-linked genes influence various complex traits in dairy cattle
por: Sanchez, Marie-Pierre, et al.
Publicado: (2023)

Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle
por: Pausch, Hubert, et al.
Publicado: (2017)

Mutation of the MYH3 gene causes recessive cleft palate in Limousine cattle
por: Vaiman, Anne, et al.
Publicado: (2022)

High-density marker imputation accuracy in sixteen French cattle breeds
por: Hozé, Chris, et al.
Publicado: (2013)

The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle
por: Lloret-Villas, Audald, et al.
Publicado: (2023)

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle
por: van Binsbergen, Rianne, et al.
Publicado: (2015)

Accuracy of genotype imputation in Nelore cattle
por: Carvalheiro, Roberto, et al.
Publicado: (2014)

Linkage disequilibrium and past effective population size in native Tunisian cattle
por: Jemaa, Slim Ben, et al.
Publicado: (2019)

Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle
por: Frischknecht, Mirjam, et al.
Publicado: (2017)

Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 QTL for fat and protein percentages in milk at nucleotide resolution
por: Pausch, Hubert, et al.
Publicado: (2017)

Whole genome sequencing reveals signals of adaptive admixture in Creole cattle
por: Ben-Jemaa, Slim, et al.
Publicado: (2023)

Strategies for genotype imputation in composite beef cattle
por: Chud, Tatiane C. S., et al.
Publicado: (2015)

New insights into the genetic resistance to paratuberculosis in Holstein cattle via single-step genomic evaluation
por: Sanchez, Marie-Pierre, et al.
Publicado: (2022)

A multi-trait meta-analysis with imputed sequence variants reveals twelve QTL for mammary gland morphology in Fleckvieh cattle
por: Pausch, Hubert, et al.
Publicado: (2016)

The Genome Response to Artificial Selection: A Case Study in Dairy Cattle
por: Flori, Laurence, et al.
Publicado: (2009)

Detection of Haplotypes Associated with Prenatal Death in Dairy Cattle and Identification of Deleterious Mutations in GART, SHBG and SLC37A2
por: Fritz, Sébastien, et al.
Publicado: (2013)

Finding the Optimal Imputation Strategy for Small Cattle Populations
por: Korkuć, Paula, et al.
Publicado: (2019)

Imputation accuracy to whole-genome sequence in Nellore cattle
por: Fernandes Júnior, Gerardo A., et al.
Publicado: (2021)

Re-Evaluation of Genotyping Methodologies in Cattle: The Proficiency of Imputation
por: Gershoni, Moran, et al.
Publicado: (2023)

Genome-wide scan for selection signatures reveals novel insights into the adaptive capacity in local North African cattle
por: Ben-Jemaa, Slim, et al.
Publicado: (2020)

Investigating the accuracy of imputing autosomal variants in Nellore cattle using the ARS-UCD1.2 assembly of the bovine genome
por: Hermisdorff, Isis da Costa, et al.
Publicado: (2020)

Genome-wide insights into population structure and genetic history of tunisian local cattle using the illumina bovinesnp50 beadchip
por: Ben Jemaa, Slim, et al.
Publicado: (2015)

Connectedness in the French Holstein cattle population
por: Hanocq, Eric, et al.
Publicado: (1999)

Application of imputation methods to genomic selection in Chinese Holstein cattle
por: Weng, Ziqing, et al.
Publicado: (2012)

Accuracy of genome-wide imputation in Braford and Hereford beef cattle
por: Piccoli, Mario L, et al.
Publicado: (2014)

Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations
por: Xiang, Ruidong, et al.
Publicado: (2021)

Integrin alpha 6 homozygous splice-site mutation causes a new form of junctional epidermolysis bullosa in Charolais cattle
por: Boussaha, Mekki, et al.
Publicado: (2023)

Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle
por: Khatkar, Mehar S, et al.
Publicado: (2012)

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle
por: van Binsbergen, Rianne, et al.
Publicado: (2014)

Evaluation of Whole-Genome Sequence Imputation Strategies in Korean Hanwoo Cattle
por: Nawaz, Muhammad Yasir, et al.
Publicado: (2022)

Sequence-based GWAS meta-analyses for beef production traits
por: Sanchez, Marie-Pierre, et al.
Publicado: (2023)

Correction: Sequence-based GWAS meta-analyses for beef production traits
por: Sanchez, Marie-Pierre, et al.
Publicado: (2023)

Identification of the ABCC4, IER3, and CBFA2T2 candidate genes for resistance to paratuberculosis from sequence-based GWAS in Holstein and Normande dairy cattle
por: Sanchez, Marie-Pierre, et al.
Publicado: (2020)

Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle
por: Ben-Jemaa, Slim, et al.
Publicado: (2021)

Level-biases in estimated breeding values due to the use of different SNP panels over time in ssGBLUP
por: Nordbø, Øyvind, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_38qr4h4rnal9pc5ateu2ev1ouf