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Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration

The tumor microenvironment (TME) has attracted attention owing to its essential role in tumor initiation, progression, and metastasis. With the emergence of immunotherapies for various cancers, and their high efficacy, an understanding of the TME in gastric cancer (GC) is critical. The aim of this s...

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Autores principales: Wei, Shenyu, Lu, Jiahua, Lou, Jianying, Shi, Chengwei, Mo, Shaowei, Shao, Yaojian, Ni, Junjie, Zhang, Wu, Cheng, Xiangdong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7339942/
https://www.ncbi.nlm.nih.gov/pubmed/32695142
http://dx.doi.org/10.3389/fgene.2020.00663
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author Wei, Shenyu
Lu, Jiahua
Lou, Jianying
Shi, Chengwei
Mo, Shaowei
Shao, Yaojian
Ni, Junjie
Zhang, Wu
Cheng, Xiangdong
author_facet Wei, Shenyu
Lu, Jiahua
Lou, Jianying
Shi, Chengwei
Mo, Shaowei
Shao, Yaojian
Ni, Junjie
Zhang, Wu
Cheng, Xiangdong
author_sort Wei, Shenyu
collection PubMed
description The tumor microenvironment (TME) has attracted attention owing to its essential role in tumor initiation, progression, and metastasis. With the emergence of immunotherapies for various cancers, and their high efficacy, an understanding of the TME in gastric cancer (GC) is critical. The aim of this study was to investigate the effect of various components within the GC TME, and to identify mechanisms that exhibit potential as therapeutic targets. The ESTIMATE algorithm was used to quantify immune and stromal components in GC samples, whose clinicopathological significance and relationship with predicted outcomes were explored. Low tumor mutational burden and high M2 macrophage infiltration, which are considered immune suppressive characteristics and may be responsible for unfavorable prognoses in GC, were observed in the high stromal group (HR = 1.585; 95% CI, 1.112–2.259; P = 0.009). Furthermore, weighted correlation network, differential expression, and univariate Cox analyses were used, along with machine learning methods (LASSO and SVM-RFE), to reveal genome-wide immune phenotypic correlations. Eight stromal-relevant genes cluster (FSTL1, RAB31, FBN1, ANTXR1, LRRC32, CTSK, COL5A2, and ENG) were identified as adverse prognostic factors in GC. Finally, using a combination of TIMER database and single-sample gene set enrichment analyses, we found that the identified genes potentially contribute to macrophage recruitment and polarization of tumor-associated macrophages. These findings provide a different perspective into the immune microenvironment and indicate potential prognostic and therapeutic targets for GC immunotherapies.
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spelling pubmed-73399422020-07-20 Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration Wei, Shenyu Lu, Jiahua Lou, Jianying Shi, Chengwei Mo, Shaowei Shao, Yaojian Ni, Junjie Zhang, Wu Cheng, Xiangdong Front Genet Genetics The tumor microenvironment (TME) has attracted attention owing to its essential role in tumor initiation, progression, and metastasis. With the emergence of immunotherapies for various cancers, and their high efficacy, an understanding of the TME in gastric cancer (GC) is critical. The aim of this study was to investigate the effect of various components within the GC TME, and to identify mechanisms that exhibit potential as therapeutic targets. The ESTIMATE algorithm was used to quantify immune and stromal components in GC samples, whose clinicopathological significance and relationship with predicted outcomes were explored. Low tumor mutational burden and high M2 macrophage infiltration, which are considered immune suppressive characteristics and may be responsible for unfavorable prognoses in GC, were observed in the high stromal group (HR = 1.585; 95% CI, 1.112–2.259; P = 0.009). Furthermore, weighted correlation network, differential expression, and univariate Cox analyses were used, along with machine learning methods (LASSO and SVM-RFE), to reveal genome-wide immune phenotypic correlations. Eight stromal-relevant genes cluster (FSTL1, RAB31, FBN1, ANTXR1, LRRC32, CTSK, COL5A2, and ENG) were identified as adverse prognostic factors in GC. Finally, using a combination of TIMER database and single-sample gene set enrichment analyses, we found that the identified genes potentially contribute to macrophage recruitment and polarization of tumor-associated macrophages. These findings provide a different perspective into the immune microenvironment and indicate potential prognostic and therapeutic targets for GC immunotherapies. Frontiers Media S.A. 2020-06-30 /pmc/articles/PMC7339942/ /pubmed/32695142 http://dx.doi.org/10.3389/fgene.2020.00663 Text en Copyright © 2020 Wei, Lu, Lou, Shi, Mo, Shao, Ni, Zhang and Cheng. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Wei, Shenyu
Lu, Jiahua
Lou, Jianying
Shi, Chengwei
Mo, Shaowei
Shao, Yaojian
Ni, Junjie
Zhang, Wu
Cheng, Xiangdong
Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
title Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
title_full Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
title_fullStr Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
title_full_unstemmed Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
title_short Gastric Cancer Tumor Microenvironment Characterization Reveals Stromal-Related Gene Signatures Associated With Macrophage Infiltration
title_sort gastric cancer tumor microenvironment characterization reveals stromal-related gene signatures associated with macrophage infiltration
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7339942/
https://www.ncbi.nlm.nih.gov/pubmed/32695142
http://dx.doi.org/10.3389/fgene.2020.00663
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