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Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids
Bond-length distributions are examined for 63 transition metal ions bonded to O(2−) in 147 configurations, for 7522 coordination polyhedra and 41 488 bond distances, providing baseline statistical knowledge of bond lengths for transition metals bonded to O(2−). A priori bond valences are calculated...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7340253/ https://www.ncbi.nlm.nih.gov/pubmed/32695408 http://dx.doi.org/10.1107/S2052252520005928 |
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author | Gagné, Olivier Charles Hawthorne, Frank Christopher |
author_facet | Gagné, Olivier Charles Hawthorne, Frank Christopher |
author_sort | Gagné, Olivier Charles |
collection | PubMed |
description | Bond-length distributions are examined for 63 transition metal ions bonded to O(2−) in 147 configurations, for 7522 coordination polyhedra and 41 488 bond distances, providing baseline statistical knowledge of bond lengths for transition metals bonded to O(2−). A priori bond valences are calculated for 140 crystal structures containing 266 coordination polyhedra for 85 transition metal ion configurations with anomalous bond-length distributions. Two new indices, Δ(topol) and Δ(cryst), are proposed to quantify bond-length variation arising from bond-topological and crystallographic effects in extended solids. Bond-topological mechanisms of bond-length variation are (1) non-local bond-topological asymmetry and (2) multiple-bond formation; crystallographic mechanisms are (3) electronic effects (with an inherent focus on coupled electronic vibrational degeneracy in this work) and (4) crystal-structure effects. The indices Δ(topol) and Δ(cryst) allow one to determine the primary cause(s) of bond-length variation for individual coordination polyhedra and ion configurations, quantify the distorting power of cations via electronic effects (by subtracting the bond-topological contribution to bond-length variation), set expectation limits regarding the extent to which functional properties linked to bond-length variation may be optimized in a given crystal structure (and inform how optimization may be achieved) and more. These indices further provide an equal footing for comparing bond-length variation and the distorting power of ions across ligand types, including resolution for heteroligand polyhedra. The observation of multiple bonds is found to be primarily driven by the bond-topological requirements of crystal structures in solids. However, sometimes multiple bonds are observed to form as a result of electronic effects (e.g. the pseudo Jahn–Teller effect, PJTE); resolution of the origins of multiple-bond formation follows calculation of the Δ(topol) and Δ(cryst) indices on a structure-by-structure basis. Non-local bond-topological asymmetry is the most common cause of bond-length variation in transition metal oxides and oxysalts, followed closely by the PJTE. Non-local bond-topological asymmetry is further suggested to be the most widespread cause of bond-length variation in the solid state, with no a priori limitations with regard to ion identity. Overall, bond-length variations resulting from the PJTE are slightly larger than those resulting from non-local bond-topological asymmetry, comparable with those resulting from the strong JTE, and less than those induced by π-bond formation. From a comparison of a priori and observed bond valences for ∼150 coordination polyhedra in which the strong JTE or the PJTE is the main reason underlying bond-length variation, the JTE is found not to have a cooperative relation with the bond-topological requirements of crystal structures. The magnitude of bond-length variation caused by the PJTE decreases in the following order for octahedrally coordinated d (0) transition metal oxyanions: Os(8+) > Mo(6+) > W(6+) >> V(5+) > Nb(5+) > Ti(4+) > Ta(5+) > Hf(4+) > Zr(4+) > Re(7+) >> Y(3+) > Sc(3+). Such ranking varies by coordination number; for [4] it is Re(7+) > Ti(4+) > V(5+) > W(6+) > Mo(6+) > Cr(6+) > Os(8+) >> Mn(7+); for [5] it is Os(8+) > Re(7+) > Mo(6+) > Ti(4+) > W(6+) > V(5+) > Nb(5+). It is concluded that non-octahedral coordinations of d (0) ion configurations are likely to occur with bond-length variations that are similar in magnitude to their octahedral counterparts. However, smaller bond-length variations are expected from the PJTE for non-d (0) transition metal oxyanions. |
format | Online Article Text |
id | pubmed-7340253 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-73402532020-07-20 Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids Gagné, Olivier Charles Hawthorne, Frank Christopher IUCrJ Lead Articles Bond-length distributions are examined for 63 transition metal ions bonded to O(2−) in 147 configurations, for 7522 coordination polyhedra and 41 488 bond distances, providing baseline statistical knowledge of bond lengths for transition metals bonded to O(2−). A priori bond valences are calculated for 140 crystal structures containing 266 coordination polyhedra for 85 transition metal ion configurations with anomalous bond-length distributions. Two new indices, Δ(topol) and Δ(cryst), are proposed to quantify bond-length variation arising from bond-topological and crystallographic effects in extended solids. Bond-topological mechanisms of bond-length variation are (1) non-local bond-topological asymmetry and (2) multiple-bond formation; crystallographic mechanisms are (3) electronic effects (with an inherent focus on coupled electronic vibrational degeneracy in this work) and (4) crystal-structure effects. The indices Δ(topol) and Δ(cryst) allow one to determine the primary cause(s) of bond-length variation for individual coordination polyhedra and ion configurations, quantify the distorting power of cations via electronic effects (by subtracting the bond-topological contribution to bond-length variation), set expectation limits regarding the extent to which functional properties linked to bond-length variation may be optimized in a given crystal structure (and inform how optimization may be achieved) and more. These indices further provide an equal footing for comparing bond-length variation and the distorting power of ions across ligand types, including resolution for heteroligand polyhedra. The observation of multiple bonds is found to be primarily driven by the bond-topological requirements of crystal structures in solids. However, sometimes multiple bonds are observed to form as a result of electronic effects (e.g. the pseudo Jahn–Teller effect, PJTE); resolution of the origins of multiple-bond formation follows calculation of the Δ(topol) and Δ(cryst) indices on a structure-by-structure basis. Non-local bond-topological asymmetry is the most common cause of bond-length variation in transition metal oxides and oxysalts, followed closely by the PJTE. Non-local bond-topological asymmetry is further suggested to be the most widespread cause of bond-length variation in the solid state, with no a priori limitations with regard to ion identity. Overall, bond-length variations resulting from the PJTE are slightly larger than those resulting from non-local bond-topological asymmetry, comparable with those resulting from the strong JTE, and less than those induced by π-bond formation. From a comparison of a priori and observed bond valences for ∼150 coordination polyhedra in which the strong JTE or the PJTE is the main reason underlying bond-length variation, the JTE is found not to have a cooperative relation with the bond-topological requirements of crystal structures. The magnitude of bond-length variation caused by the PJTE decreases in the following order for octahedrally coordinated d (0) transition metal oxyanions: Os(8+) > Mo(6+) > W(6+) >> V(5+) > Nb(5+) > Ti(4+) > Ta(5+) > Hf(4+) > Zr(4+) > Re(7+) >> Y(3+) > Sc(3+). Such ranking varies by coordination number; for [4] it is Re(7+) > Ti(4+) > V(5+) > W(6+) > Mo(6+) > Cr(6+) > Os(8+) >> Mn(7+); for [5] it is Os(8+) > Re(7+) > Mo(6+) > Ti(4+) > W(6+) > V(5+) > Nb(5+). It is concluded that non-octahedral coordinations of d (0) ion configurations are likely to occur with bond-length variations that are similar in magnitude to their octahedral counterparts. However, smaller bond-length variations are expected from the PJTE for non-d (0) transition metal oxyanions. International Union of Crystallography 2020-06-09 /pmc/articles/PMC7340253/ /pubmed/32695408 http://dx.doi.org/10.1107/S2052252520005928 Text en © Gagné and Hawthorne 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Lead Articles Gagné, Olivier Charles Hawthorne, Frank Christopher Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids |
title | Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids |
title_full | Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids |
title_fullStr | Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids |
title_full_unstemmed | Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids |
title_short | Bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids |
title_sort | bond-length distributions for ions bonded to oxygen: results for the transition metals and quantification of the factors underlying bond-length variation in inorganic solids |
topic | Lead Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7340253/ https://www.ncbi.nlm.nih.gov/pubmed/32695408 http://dx.doi.org/10.1107/S2052252520005928 |
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