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On the evolution of the quality of macromolecular models in the PDB

Crystallographic models of biological macromolecules have been ranked using the quality criteria associated with them in the Protein Data Bank (PDB). The outcomes of this quality analysis have been correlated with time and with the journals that published papers based on those models. The results sh...

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Autores principales: Brzezinski, Dariusz, Dauter, Zbigniew, Minor, Wladek, Jaskolski, Mariusz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7340579/
https://www.ncbi.nlm.nih.gov/pubmed/32311227
http://dx.doi.org/10.1111/febs.15314
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author Brzezinski, Dariusz
Dauter, Zbigniew
Minor, Wladek
Jaskolski, Mariusz
author_facet Brzezinski, Dariusz
Dauter, Zbigniew
Minor, Wladek
Jaskolski, Mariusz
author_sort Brzezinski, Dariusz
collection PubMed
description Crystallographic models of biological macromolecules have been ranked using the quality criteria associated with them in the Protein Data Bank (PDB). The outcomes of this quality analysis have been correlated with time and with the journals that published papers based on those models. The results show that the overall quality of PDB structures has substantially improved over the last ten years, but this period of progress was preceded by several years of stagnation or even depression. Moreover, the study shows that the historically observed negative correlation between journal impact and the quality of structural models presented therein seems to disappear as time progresses.
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spelling pubmed-73405792020-07-27 On the evolution of the quality of macromolecular models in the PDB Brzezinski, Dariusz Dauter, Zbigniew Minor, Wladek Jaskolski, Mariusz FEBS J Commentary Crystallographic models of biological macromolecules have been ranked using the quality criteria associated with them in the Protein Data Bank (PDB). The outcomes of this quality analysis have been correlated with time and with the journals that published papers based on those models. The results show that the overall quality of PDB structures has substantially improved over the last ten years, but this period of progress was preceded by several years of stagnation or even depression. Moreover, the study shows that the historically observed negative correlation between journal impact and the quality of structural models presented therein seems to disappear as time progresses. John Wiley and Sons Inc. 2020-04-20 2020-07 /pmc/articles/PMC7340579/ /pubmed/32311227 http://dx.doi.org/10.1111/febs.15314 Text en © 2020 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Brzezinski, Dariusz
Dauter, Zbigniew
Minor, Wladek
Jaskolski, Mariusz
On the evolution of the quality of macromolecular models in the PDB
title On the evolution of the quality of macromolecular models in the PDB
title_full On the evolution of the quality of macromolecular models in the PDB
title_fullStr On the evolution of the quality of macromolecular models in the PDB
title_full_unstemmed On the evolution of the quality of macromolecular models in the PDB
title_short On the evolution of the quality of macromolecular models in the PDB
title_sort on the evolution of the quality of macromolecular models in the pdb
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7340579/
https://www.ncbi.nlm.nih.gov/pubmed/32311227
http://dx.doi.org/10.1111/febs.15314
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