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Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2

The coronavirus disease (COVID-19) belongs to the family Severe Acute Respiratory Syndrome (SARS-CoV). It can be more severe for some persons and can lead to pneumonia or breathing difficulties resulting in the death of immune-compromised patients. We performed a phylogenomic and phylogeographic tre...

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Detalles Bibliográficos
Autores principales: Prathiviraj, R., Kiran, George Seghal, Selvin, Joseph
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7341045/
https://www.ncbi.nlm.nih.gov/pubmed/32835133
http://dx.doi.org/10.1016/j.genrep.2020.100777
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author Prathiviraj, R.
Kiran, George Seghal
Selvin, Joseph
author_facet Prathiviraj, R.
Kiran, George Seghal
Selvin, Joseph
author_sort Prathiviraj, R.
collection PubMed
description The coronavirus disease (COVID-19) belongs to the family Severe Acute Respiratory Syndrome (SARS-CoV). It can be more severe for some persons and can lead to pneumonia or breathing difficulties resulting in the death of immune-compromised patients. We performed a phylogenomic and phylogeographic tree from the collected datasets. Phylogenomic analysis or sequence-based phylogeny showed an evolutionary relationship between the geographical strains. The phylogenomic tree grouped into two major clades consists of various isolates of SARS-CoV-2 and Bat SARS-like coronavirus, Bat coronavirus, and Pangolin coronavirus. The phylogenetic neighbor of newly sequenced Indian strains (Accession: MT012098.1, MT050493.1) was revealed to identify the variations between the nCoV-19 strains. The results showed keen evidence that SARS-CoV-2 has evolved from Bat SARS-like coronavirus. The evolutionary history and comparative proteomic analysis provide a new avenue for the current scientific research related to the coronavirus.
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spelling pubmed-73410452020-07-08 Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2 Prathiviraj, R. Kiran, George Seghal Selvin, Joseph Gene Rep Article The coronavirus disease (COVID-19) belongs to the family Severe Acute Respiratory Syndrome (SARS-CoV). It can be more severe for some persons and can lead to pneumonia or breathing difficulties resulting in the death of immune-compromised patients. We performed a phylogenomic and phylogeographic tree from the collected datasets. Phylogenomic analysis or sequence-based phylogeny showed an evolutionary relationship between the geographical strains. The phylogenomic tree grouped into two major clades consists of various isolates of SARS-CoV-2 and Bat SARS-like coronavirus, Bat coronavirus, and Pangolin coronavirus. The phylogenetic neighbor of newly sequenced Indian strains (Accession: MT012098.1, MT050493.1) was revealed to identify the variations between the nCoV-19 strains. The results showed keen evidence that SARS-CoV-2 has evolved from Bat SARS-like coronavirus. The evolutionary history and comparative proteomic analysis provide a new avenue for the current scientific research related to the coronavirus. Elsevier Inc. 2020-09 2020-07-08 /pmc/articles/PMC7341045/ /pubmed/32835133 http://dx.doi.org/10.1016/j.genrep.2020.100777 Text en © 2020 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Prathiviraj, R.
Kiran, George Seghal
Selvin, Joseph
Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2
title Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2
title_full Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2
title_fullStr Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2
title_full_unstemmed Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2
title_short Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2
title_sort phylogenomic proximity and comparative proteomic analysis of sars-cov-2
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7341045/
https://www.ncbi.nlm.nih.gov/pubmed/32835133
http://dx.doi.org/10.1016/j.genrep.2020.100777
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