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Hybrid deep learning for detecting lung diseases from X-ray images

Lung disease is common throughout the world. These include chronic obstructive pulmonary disease, pneumonia, asthma, tuberculosis, fibrosis, etc. Timely diagnosis of lung disease is essential. Many image processing and machine learning models have been developed for this purpose. Different forms of...

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Autores principales: Bharati, Subrato, Podder, Prajoy, Mondal, M. Rubaiyat Hossain
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Ltd. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7341954/
https://www.ncbi.nlm.nih.gov/pubmed/32835077
http://dx.doi.org/10.1016/j.imu.2020.100391
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author Bharati, Subrato
Podder, Prajoy
Mondal, M. Rubaiyat Hossain
author_facet Bharati, Subrato
Podder, Prajoy
Mondal, M. Rubaiyat Hossain
author_sort Bharati, Subrato
collection PubMed
description Lung disease is common throughout the world. These include chronic obstructive pulmonary disease, pneumonia, asthma, tuberculosis, fibrosis, etc. Timely diagnosis of lung disease is essential. Many image processing and machine learning models have been developed for this purpose. Different forms of existing deep learning techniques including convolutional neural network (CNN), vanilla neural network, visual geometry group based neural network (VGG), and capsule network are applied for lung disease prediction. The basic CNN has poor performance for rotated, tilted, or other abnormal image orientation. Therefore, we propose a new hybrid deep learning framework by combining VGG, data augmentation and spatial transformer network (STN) with CNN. This new hybrid method is termed here as VGG Data STN with CNN (VDSNet). As implementation tools, Jupyter Notebook, Tensorflow, and Keras are used. The new model is applied to NIH chest X-ray image dataset collected from Kaggle repository. Full and sample versions of the dataset are considered. For both full and sample datasets, VDSNet outperforms existing methods in terms of a number of metrics including precision, recall, F0.5 score and validation accuracy. For the case of full dataset, VDSNet exhibits a validation accuracy of 73%, while vanilla gray, vanilla RGB, hybrid CNN and VGG, and modified capsule network have accuracy values of 67.8%, 69%, 69.5% and 63.8%, respectively. When sample dataset rather than full dataset is used, VDSNet requires much lower training time at the expense of a slightly lower validation accuracy. Hence, the proposed VDSNet framework will simplify the detection of lung disease for experts as well as for doctors.
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spelling pubmed-73419542020-07-08 Hybrid deep learning for detecting lung diseases from X-ray images Bharati, Subrato Podder, Prajoy Mondal, M. Rubaiyat Hossain Inform Med Unlocked Article Lung disease is common throughout the world. These include chronic obstructive pulmonary disease, pneumonia, asthma, tuberculosis, fibrosis, etc. Timely diagnosis of lung disease is essential. Many image processing and machine learning models have been developed for this purpose. Different forms of existing deep learning techniques including convolutional neural network (CNN), vanilla neural network, visual geometry group based neural network (VGG), and capsule network are applied for lung disease prediction. The basic CNN has poor performance for rotated, tilted, or other abnormal image orientation. Therefore, we propose a new hybrid deep learning framework by combining VGG, data augmentation and spatial transformer network (STN) with CNN. This new hybrid method is termed here as VGG Data STN with CNN (VDSNet). As implementation tools, Jupyter Notebook, Tensorflow, and Keras are used. The new model is applied to NIH chest X-ray image dataset collected from Kaggle repository. Full and sample versions of the dataset are considered. For both full and sample datasets, VDSNet outperforms existing methods in terms of a number of metrics including precision, recall, F0.5 score and validation accuracy. For the case of full dataset, VDSNet exhibits a validation accuracy of 73%, while vanilla gray, vanilla RGB, hybrid CNN and VGG, and modified capsule network have accuracy values of 67.8%, 69%, 69.5% and 63.8%, respectively. When sample dataset rather than full dataset is used, VDSNet requires much lower training time at the expense of a slightly lower validation accuracy. Hence, the proposed VDSNet framework will simplify the detection of lung disease for experts as well as for doctors. The Authors. Published by Elsevier Ltd. 2020 2020-07-04 /pmc/articles/PMC7341954/ /pubmed/32835077 http://dx.doi.org/10.1016/j.imu.2020.100391 Text en © 2020 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Bharati, Subrato
Podder, Prajoy
Mondal, M. Rubaiyat Hossain
Hybrid deep learning for detecting lung diseases from X-ray images
title Hybrid deep learning for detecting lung diseases from X-ray images
title_full Hybrid deep learning for detecting lung diseases from X-ray images
title_fullStr Hybrid deep learning for detecting lung diseases from X-ray images
title_full_unstemmed Hybrid deep learning for detecting lung diseases from X-ray images
title_short Hybrid deep learning for detecting lung diseases from X-ray images
title_sort hybrid deep learning for detecting lung diseases from x-ray images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7341954/
https://www.ncbi.nlm.nih.gov/pubmed/32835077
http://dx.doi.org/10.1016/j.imu.2020.100391
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