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Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression

Stochastic dynamics of gene switching and energy dissipation for gene expression are largely unknown, mainly due to the complexity of non-equilibrium mechanisms. Here, based on an important double-deck loop model, the stochastic mechanisms of gene switching and energy dissipation are studied. First,...

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Autores principales: Liu, Quan, Yu, FengZhen, Yi, Liang, Gao, Yijun, Gui, Rong, Yi, Ming, Sun, Jianqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7343763/
https://www.ncbi.nlm.nih.gov/pubmed/32714375
http://dx.doi.org/10.3389/fgene.2020.00676
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author Liu, Quan
Yu, FengZhen
Yi, Liang
Gao, Yijun
Gui, Rong
Yi, Ming
Sun, Jianqiang
author_facet Liu, Quan
Yu, FengZhen
Yi, Liang
Gao, Yijun
Gui, Rong
Yi, Ming
Sun, Jianqiang
author_sort Liu, Quan
collection PubMed
description Stochastic dynamics of gene switching and energy dissipation for gene expression are largely unknown, mainly due to the complexity of non-equilibrium mechanisms. Here, based on an important double-deck loop model, the stochastic mechanisms of gene switching and energy dissipation are studied. First, the probability distributions of steady states are calculated theoretically. It is found that the signal can strengthen the choice of gene switching between the “off” and “on” states. Our analysis of energy consumption illustrates that, compared with the synthesis and degradation of proteins, the process of gene switching costs little energy. Our theoretical analysis reveals some interesting insights into the determination of cell state and energy dissipation for gene expression.
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spelling pubmed-73437632020-07-25 Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression Liu, Quan Yu, FengZhen Yi, Liang Gao, Yijun Gui, Rong Yi, Ming Sun, Jianqiang Front Genet Genetics Stochastic dynamics of gene switching and energy dissipation for gene expression are largely unknown, mainly due to the complexity of non-equilibrium mechanisms. Here, based on an important double-deck loop model, the stochastic mechanisms of gene switching and energy dissipation are studied. First, the probability distributions of steady states are calculated theoretically. It is found that the signal can strengthen the choice of gene switching between the “off” and “on” states. Our analysis of energy consumption illustrates that, compared with the synthesis and degradation of proteins, the process of gene switching costs little energy. Our theoretical analysis reveals some interesting insights into the determination of cell state and energy dissipation for gene expression. Frontiers Media S.A. 2020-07-02 /pmc/articles/PMC7343763/ /pubmed/32714375 http://dx.doi.org/10.3389/fgene.2020.00676 Text en Copyright © 2020 Liu, Yu, Yi, Gao, Gui, Yi and Sun. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Liu, Quan
Yu, FengZhen
Yi, Liang
Gao, Yijun
Gui, Rong
Yi, Ming
Sun, Jianqiang
Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression
title Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression
title_full Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression
title_fullStr Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression
title_full_unstemmed Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression
title_short Stochastic Dynamics of Gene Switching and Energy Dissipation for Gene Expression
title_sort stochastic dynamics of gene switching and energy dissipation for gene expression
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7343763/
https://www.ncbi.nlm.nih.gov/pubmed/32714375
http://dx.doi.org/10.3389/fgene.2020.00676
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