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Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain

The emergence of social organization (eusociality) is a major event in insect evolution. Although previous studies have investigated the mechanisms underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing sociality in the...

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Autores principales: Wang, Mingyue, Liu, Yang, Wen, Tinggang, Liu, Weiwei, Gao, Qionghua, Zhao, Jie, Xiong, Zijun, Wang, Zhifeng, Jiang, Wei, Yu, Yeya, Wu, Liang, Yuan, Yue, Wei, Xiaoyu, Xu, Jiangshan, Cheng, Mengnan, Zhang, Pei, Li, Panyi, Hou, Yong, Yang, Huanming, Zhang, Guojie, Li, Qiye, Liu, Chuanyu, Liu, Longqi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7343836/
https://www.ncbi.nlm.nih.gov/pubmed/32641764
http://dx.doi.org/10.1038/s41597-020-0556-x
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author Wang, Mingyue
Liu, Yang
Wen, Tinggang
Liu, Weiwei
Gao, Qionghua
Zhao, Jie
Xiong, Zijun
Wang, Zhifeng
Jiang, Wei
Yu, Yeya
Wu, Liang
Yuan, Yue
Wei, Xiaoyu
Xu, Jiangshan
Cheng, Mengnan
Zhang, Pei
Li, Panyi
Hou, Yong
Yang, Huanming
Zhang, Guojie
Li, Qiye
Liu, Chuanyu
Liu, Longqi
author_facet Wang, Mingyue
Liu, Yang
Wen, Tinggang
Liu, Weiwei
Gao, Qionghua
Zhao, Jie
Xiong, Zijun
Wang, Zhifeng
Jiang, Wei
Yu, Yeya
Wu, Liang
Yuan, Yue
Wei, Xiaoyu
Xu, Jiangshan
Cheng, Mengnan
Zhang, Pei
Li, Panyi
Hou, Yong
Yang, Huanming
Zhang, Guojie
Li, Qiye
Liu, Chuanyu
Liu, Longqi
author_sort Wang, Mingyue
collection PubMed
description The emergence of social organization (eusociality) is a major event in insect evolution. Although previous studies have investigated the mechanisms underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing sociality in these insects remain obscure. In this study, we profiled the transcriptome and chromatin accessibility of brain tissues in three Monomorium pharaonis ant castes: queens (including mature and un-mated queens), males and workers. We provide a comprehensive dataset including 16 RNA-sequencing and 16 assay for transposase accessible chromatin (ATAC)-sequencing profiles. We also demonstrate strong reproducibility of the datasets and have identified specific genes and open chromatin regions in the genome that may be associated with the social function of these castes. Our data will be a valuable resource for further studies of insect behaviour, particularly the role of brain in the control of eusociality.
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spelling pubmed-73438362020-07-13 Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain Wang, Mingyue Liu, Yang Wen, Tinggang Liu, Weiwei Gao, Qionghua Zhao, Jie Xiong, Zijun Wang, Zhifeng Jiang, Wei Yu, Yeya Wu, Liang Yuan, Yue Wei, Xiaoyu Xu, Jiangshan Cheng, Mengnan Zhang, Pei Li, Panyi Hou, Yong Yang, Huanming Zhang, Guojie Li, Qiye Liu, Chuanyu Liu, Longqi Sci Data Data Descriptor The emergence of social organization (eusociality) is a major event in insect evolution. Although previous studies have investigated the mechanisms underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing sociality in these insects remain obscure. In this study, we profiled the transcriptome and chromatin accessibility of brain tissues in three Monomorium pharaonis ant castes: queens (including mature and un-mated queens), males and workers. We provide a comprehensive dataset including 16 RNA-sequencing and 16 assay for transposase accessible chromatin (ATAC)-sequencing profiles. We also demonstrate strong reproducibility of the datasets and have identified specific genes and open chromatin regions in the genome that may be associated with the social function of these castes. Our data will be a valuable resource for further studies of insect behaviour, particularly the role of brain in the control of eusociality. Nature Publishing Group UK 2020-07-08 /pmc/articles/PMC7343836/ /pubmed/32641764 http://dx.doi.org/10.1038/s41597-020-0556-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Wang, Mingyue
Liu, Yang
Wen, Tinggang
Liu, Weiwei
Gao, Qionghua
Zhao, Jie
Xiong, Zijun
Wang, Zhifeng
Jiang, Wei
Yu, Yeya
Wu, Liang
Yuan, Yue
Wei, Xiaoyu
Xu, Jiangshan
Cheng, Mengnan
Zhang, Pei
Li, Panyi
Hou, Yong
Yang, Huanming
Zhang, Guojie
Li, Qiye
Liu, Chuanyu
Liu, Longqi
Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
title Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
title_full Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
title_fullStr Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
title_full_unstemmed Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
title_short Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
title_sort chromatin accessibility and transcriptome landscapes of monomorium pharaonis brain
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7343836/
https://www.ncbi.nlm.nih.gov/pubmed/32641764
http://dx.doi.org/10.1038/s41597-020-0556-x
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