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Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain
The emergence of social organization (eusociality) is a major event in insect evolution. Although previous studies have investigated the mechanisms underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing sociality in the...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7343836/ https://www.ncbi.nlm.nih.gov/pubmed/32641764 http://dx.doi.org/10.1038/s41597-020-0556-x |
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author | Wang, Mingyue Liu, Yang Wen, Tinggang Liu, Weiwei Gao, Qionghua Zhao, Jie Xiong, Zijun Wang, Zhifeng Jiang, Wei Yu, Yeya Wu, Liang Yuan, Yue Wei, Xiaoyu Xu, Jiangshan Cheng, Mengnan Zhang, Pei Li, Panyi Hou, Yong Yang, Huanming Zhang, Guojie Li, Qiye Liu, Chuanyu Liu, Longqi |
author_facet | Wang, Mingyue Liu, Yang Wen, Tinggang Liu, Weiwei Gao, Qionghua Zhao, Jie Xiong, Zijun Wang, Zhifeng Jiang, Wei Yu, Yeya Wu, Liang Yuan, Yue Wei, Xiaoyu Xu, Jiangshan Cheng, Mengnan Zhang, Pei Li, Panyi Hou, Yong Yang, Huanming Zhang, Guojie Li, Qiye Liu, Chuanyu Liu, Longqi |
author_sort | Wang, Mingyue |
collection | PubMed |
description | The emergence of social organization (eusociality) is a major event in insect evolution. Although previous studies have investigated the mechanisms underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing sociality in these insects remain obscure. In this study, we profiled the transcriptome and chromatin accessibility of brain tissues in three Monomorium pharaonis ant castes: queens (including mature and un-mated queens), males and workers. We provide a comprehensive dataset including 16 RNA-sequencing and 16 assay for transposase accessible chromatin (ATAC)-sequencing profiles. We also demonstrate strong reproducibility of the datasets and have identified specific genes and open chromatin regions in the genome that may be associated with the social function of these castes. Our data will be a valuable resource for further studies of insect behaviour, particularly the role of brain in the control of eusociality. |
format | Online Article Text |
id | pubmed-7343836 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73438362020-07-13 Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain Wang, Mingyue Liu, Yang Wen, Tinggang Liu, Weiwei Gao, Qionghua Zhao, Jie Xiong, Zijun Wang, Zhifeng Jiang, Wei Yu, Yeya Wu, Liang Yuan, Yue Wei, Xiaoyu Xu, Jiangshan Cheng, Mengnan Zhang, Pei Li, Panyi Hou, Yong Yang, Huanming Zhang, Guojie Li, Qiye Liu, Chuanyu Liu, Longqi Sci Data Data Descriptor The emergence of social organization (eusociality) is a major event in insect evolution. Although previous studies have investigated the mechanisms underlying caste differentiation and social behavior of eusocial insects including ants and honeybees, the molecular circuits governing sociality in these insects remain obscure. In this study, we profiled the transcriptome and chromatin accessibility of brain tissues in three Monomorium pharaonis ant castes: queens (including mature and un-mated queens), males and workers. We provide a comprehensive dataset including 16 RNA-sequencing and 16 assay for transposase accessible chromatin (ATAC)-sequencing profiles. We also demonstrate strong reproducibility of the datasets and have identified specific genes and open chromatin regions in the genome that may be associated with the social function of these castes. Our data will be a valuable resource for further studies of insect behaviour, particularly the role of brain in the control of eusociality. Nature Publishing Group UK 2020-07-08 /pmc/articles/PMC7343836/ /pubmed/32641764 http://dx.doi.org/10.1038/s41597-020-0556-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Wang, Mingyue Liu, Yang Wen, Tinggang Liu, Weiwei Gao, Qionghua Zhao, Jie Xiong, Zijun Wang, Zhifeng Jiang, Wei Yu, Yeya Wu, Liang Yuan, Yue Wei, Xiaoyu Xu, Jiangshan Cheng, Mengnan Zhang, Pei Li, Panyi Hou, Yong Yang, Huanming Zhang, Guojie Li, Qiye Liu, Chuanyu Liu, Longqi Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain |
title | Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain |
title_full | Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain |
title_fullStr | Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain |
title_full_unstemmed | Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain |
title_short | Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain |
title_sort | chromatin accessibility and transcriptome landscapes of monomorium pharaonis brain |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7343836/ https://www.ncbi.nlm.nih.gov/pubmed/32641764 http://dx.doi.org/10.1038/s41597-020-0556-x |
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