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Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification

Background: Candida auris is characterized for having a high genetic variability among species. MALDI-TOF MS library contains spectra from only three strains of C. auris, which makes difficult the identification process and gives low scores at the species level. Our aim was to construct and validate...

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Autores principales: Ceballos-Garzon, Andrés, Amado, Daniela, Vélez, Norida, Jiménez-A, María José, Rodríguez, Crescencio, Parra-Giraldo, Claudia Marcela
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7344545/
https://www.ncbi.nlm.nih.gov/pubmed/32471074
http://dx.doi.org/10.3390/jof6020072
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author Ceballos-Garzon, Andrés
Amado, Daniela
Vélez, Norida
Jiménez-A, María José
Rodríguez, Crescencio
Parra-Giraldo, Claudia Marcela
author_facet Ceballos-Garzon, Andrés
Amado, Daniela
Vélez, Norida
Jiménez-A, María José
Rodríguez, Crescencio
Parra-Giraldo, Claudia Marcela
author_sort Ceballos-Garzon, Andrés
collection PubMed
description Background: Candida auris is characterized for having a high genetic variability among species. MALDI-TOF MS library contains spectra from only three strains of C. auris, which makes difficult the identification process and gives low scores at the species level. Our aim was to construct and validate an internal library to improve C. auris identification with Colombian clinical strains. Methods: From 30 clinical strains, 770 mass spectra were obtained for the construction of the database. The validation was performed with 300 strains to compare the identification results in the BDAL and C. auris Colombia libraries. Results: Our library allowed a complete, 100% identification of the evaluated strains and a significant improvement in the scores obtained, showing a better performance compared to the Bruker BDAL library. Conclusions: The strengthening of the database is a great opportunity to improve the scoring and C. auris identification. Library data are available via ProteomeXchange with identifier PXD016387.
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spelling pubmed-73445452020-07-09 Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification Ceballos-Garzon, Andrés Amado, Daniela Vélez, Norida Jiménez-A, María José Rodríguez, Crescencio Parra-Giraldo, Claudia Marcela J Fungi (Basel) Article Background: Candida auris is characterized for having a high genetic variability among species. MALDI-TOF MS library contains spectra from only three strains of C. auris, which makes difficult the identification process and gives low scores at the species level. Our aim was to construct and validate an internal library to improve C. auris identification with Colombian clinical strains. Methods: From 30 clinical strains, 770 mass spectra were obtained for the construction of the database. The validation was performed with 300 strains to compare the identification results in the BDAL and C. auris Colombia libraries. Results: Our library allowed a complete, 100% identification of the evaluated strains and a significant improvement in the scores obtained, showing a better performance compared to the Bruker BDAL library. Conclusions: The strengthening of the database is a great opportunity to improve the scoring and C. auris identification. Library data are available via ProteomeXchange with identifier PXD016387. MDPI 2020-05-27 /pmc/articles/PMC7344545/ /pubmed/32471074 http://dx.doi.org/10.3390/jof6020072 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ceballos-Garzon, Andrés
Amado, Daniela
Vélez, Norida
Jiménez-A, María José
Rodríguez, Crescencio
Parra-Giraldo, Claudia Marcela
Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification
title Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification
title_full Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification
title_fullStr Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification
title_full_unstemmed Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification
title_short Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification
title_sort development and validation of an in-house library of colombian candida auris strains with maldi-tof ms to improve yeast identification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7344545/
https://www.ncbi.nlm.nih.gov/pubmed/32471074
http://dx.doi.org/10.3390/jof6020072
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