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A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans
PURPOSE: The purpose of this study was to develop a 3D deep learning system from spectral domain optical coherence tomography (SD-OCT) macular cubes to differentiate between referable and nonreferable cases for glaucoma applied to real-world datasets to understand how this would affect the performan...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Association for Research in Vision and Ophthalmology
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7347026/ https://www.ncbi.nlm.nih.gov/pubmed/32704418 http://dx.doi.org/10.1167/tvst.9.2.12 |
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author | Russakoff, Daniel B. Mannil, Suria S. Oakley, Jonathan D. Ran, An Ran Cheung, Carol Y. Dasari, Srilakshmi Riyazzuddin, Mohammed Nagaraj, Sriharsha Rao, Harsha L. Chang, Dolly Chang, Robert T. |
author_facet | Russakoff, Daniel B. Mannil, Suria S. Oakley, Jonathan D. Ran, An Ran Cheung, Carol Y. Dasari, Srilakshmi Riyazzuddin, Mohammed Nagaraj, Sriharsha Rao, Harsha L. Chang, Dolly Chang, Robert T. |
author_sort | Russakoff, Daniel B. |
collection | PubMed |
description | PURPOSE: The purpose of this study was to develop a 3D deep learning system from spectral domain optical coherence tomography (SD-OCT) macular cubes to differentiate between referable and nonreferable cases for glaucoma applied to real-world datasets to understand how this would affect the performance. METHODS: There were 2805 Cirrus optical coherence tomography (OCT) macula volumes (Macula protocol 512 × 128) of 1095 eyes from 586 patients at a single site that were used to train a fully 3D convolutional neural network (CNN). Referable glaucoma included true glaucoma, pre-perimetric glaucoma, and high-risk suspects, based on qualitative fundus photographs, visual fields, OCT reports, and clinical examinations, including intraocular pressure (IOP) and treatment history as the binary (two class) ground truth. The curated real-world dataset did not include eyes with retinal disease or nonglaucomatous optic neuropathies. The cubes were first homogenized using layer segmentation with the Orion Software (Voxeleron) to achieve standardization. The algorithm was tested on two separate external validation sets from different glaucoma studies, comprised of Cirrus macular cube scans of 505 and 336 eyes, respectively. RESULTS: The area under the receiver operating characteristic (AUROC) curve for the development dataset for distinguishing referable glaucoma was 0.88 for our CNN using homogenization, 0.82 without homogenization, and 0.81 for a CNN architecture from the existing literature. For the external validation datasets, which had different glaucoma definitions, the AUCs were 0.78 and 0.95, respectively. The performance of the model across myopia severity distribution has been assessed in the dataset from the United States and was found to have an AUC of 0.85, 0.92, and 0.95 in the severe, moderate, and mild myopia, respectively. CONCLUSIONS: A 3D deep learning algorithm trained on macular OCT volumes without retinal disease to detect referable glaucoma performs better with retinal segmentation preprocessing and performs reasonably well across all levels of myopia. TRANSLATIONAL RELEVANCE: Interpretation of OCT macula volumes based on normative data color distributions is highly influenced by population demographics and characteristics, such as refractive error, as well as the size of the normative database. Referable glaucoma, in this study, was chosen to include cases that should be seen by a specialist. This study is unique because it uses multimodal patient data for the glaucoma definition, and includes all severities of myopia as well as validates the algorithm with international data to understand generalizability potential. |
format | Online Article Text |
id | pubmed-7347026 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Association for Research in Vision and Ophthalmology |
record_format | MEDLINE/PubMed |
spelling | pubmed-73470262020-07-22 A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans Russakoff, Daniel B. Mannil, Suria S. Oakley, Jonathan D. Ran, An Ran Cheung, Carol Y. Dasari, Srilakshmi Riyazzuddin, Mohammed Nagaraj, Sriharsha Rao, Harsha L. Chang, Dolly Chang, Robert T. Transl Vis Sci Technol Special Issue PURPOSE: The purpose of this study was to develop a 3D deep learning system from spectral domain optical coherence tomography (SD-OCT) macular cubes to differentiate between referable and nonreferable cases for glaucoma applied to real-world datasets to understand how this would affect the performance. METHODS: There were 2805 Cirrus optical coherence tomography (OCT) macula volumes (Macula protocol 512 × 128) of 1095 eyes from 586 patients at a single site that were used to train a fully 3D convolutional neural network (CNN). Referable glaucoma included true glaucoma, pre-perimetric glaucoma, and high-risk suspects, based on qualitative fundus photographs, visual fields, OCT reports, and clinical examinations, including intraocular pressure (IOP) and treatment history as the binary (two class) ground truth. The curated real-world dataset did not include eyes with retinal disease or nonglaucomatous optic neuropathies. The cubes were first homogenized using layer segmentation with the Orion Software (Voxeleron) to achieve standardization. The algorithm was tested on two separate external validation sets from different glaucoma studies, comprised of Cirrus macular cube scans of 505 and 336 eyes, respectively. RESULTS: The area under the receiver operating characteristic (AUROC) curve for the development dataset for distinguishing referable glaucoma was 0.88 for our CNN using homogenization, 0.82 without homogenization, and 0.81 for a CNN architecture from the existing literature. For the external validation datasets, which had different glaucoma definitions, the AUCs were 0.78 and 0.95, respectively. The performance of the model across myopia severity distribution has been assessed in the dataset from the United States and was found to have an AUC of 0.85, 0.92, and 0.95 in the severe, moderate, and mild myopia, respectively. CONCLUSIONS: A 3D deep learning algorithm trained on macular OCT volumes without retinal disease to detect referable glaucoma performs better with retinal segmentation preprocessing and performs reasonably well across all levels of myopia. TRANSLATIONAL RELEVANCE: Interpretation of OCT macula volumes based on normative data color distributions is highly influenced by population demographics and characteristics, such as refractive error, as well as the size of the normative database. Referable glaucoma, in this study, was chosen to include cases that should be seen by a specialist. This study is unique because it uses multimodal patient data for the glaucoma definition, and includes all severities of myopia as well as validates the algorithm with international data to understand generalizability potential. The Association for Research in Vision and Ophthalmology 2020-02-18 /pmc/articles/PMC7347026/ /pubmed/32704418 http://dx.doi.org/10.1167/tvst.9.2.12 Text en Copyright 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. |
spellingShingle | Special Issue Russakoff, Daniel B. Mannil, Suria S. Oakley, Jonathan D. Ran, An Ran Cheung, Carol Y. Dasari, Srilakshmi Riyazzuddin, Mohammed Nagaraj, Sriharsha Rao, Harsha L. Chang, Dolly Chang, Robert T. A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans |
title | A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans |
title_full | A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans |
title_fullStr | A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans |
title_full_unstemmed | A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans |
title_short | A 3D Deep Learning System for Detecting Referable Glaucoma Using Full OCT Macular Cube Scans |
title_sort | 3d deep learning system for detecting referable glaucoma using full oct macular cube scans |
topic | Special Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7347026/ https://www.ncbi.nlm.nih.gov/pubmed/32704418 http://dx.doi.org/10.1167/tvst.9.2.12 |
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