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Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models

Our understanding of nonlinear stimulus transformations by neural circuits is hindered by the lack of comprehensive yet interpretable computational modeling frameworks. Here, we propose a data-driven approach based on deep neural networks to directly model arbitrarily nonlinear stimulus-response map...

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Autores principales: Keshishian, Menoua, Akbari, Hassan, Khalighinejad, Bahar, Herrero, Jose L, Mehta, Ashesh D, Mesgarani, Nima
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7347387/
https://www.ncbi.nlm.nih.gov/pubmed/32589140
http://dx.doi.org/10.7554/eLife.53445
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author Keshishian, Menoua
Akbari, Hassan
Khalighinejad, Bahar
Herrero, Jose L
Mehta, Ashesh D
Mesgarani, Nima
author_facet Keshishian, Menoua
Akbari, Hassan
Khalighinejad, Bahar
Herrero, Jose L
Mehta, Ashesh D
Mesgarani, Nima
author_sort Keshishian, Menoua
collection PubMed
description Our understanding of nonlinear stimulus transformations by neural circuits is hindered by the lack of comprehensive yet interpretable computational modeling frameworks. Here, we propose a data-driven approach based on deep neural networks to directly model arbitrarily nonlinear stimulus-response mappings. Reformulating the exact function of a trained neural network as a collection of stimulus-dependent linear functions enables a locally linear receptive field interpretation of the neural network. Predicting the neural responses recorded invasively from the auditory cortex of neurosurgical patients as they listened to speech, this approach significantly improves the prediction accuracy of auditory cortical responses, particularly in nonprimary areas. Moreover, interpreting the functions learned by neural networks uncovered three distinct types of nonlinear transformations of speech that varied considerably from primary to nonprimary auditory regions. The ability of this framework to capture arbitrary stimulus-response mappings while maintaining model interpretability leads to a better understanding of cortical processing of sensory signals.
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spelling pubmed-73473872020-07-13 Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models Keshishian, Menoua Akbari, Hassan Khalighinejad, Bahar Herrero, Jose L Mehta, Ashesh D Mesgarani, Nima eLife Neuroscience Our understanding of nonlinear stimulus transformations by neural circuits is hindered by the lack of comprehensive yet interpretable computational modeling frameworks. Here, we propose a data-driven approach based on deep neural networks to directly model arbitrarily nonlinear stimulus-response mappings. Reformulating the exact function of a trained neural network as a collection of stimulus-dependent linear functions enables a locally linear receptive field interpretation of the neural network. Predicting the neural responses recorded invasively from the auditory cortex of neurosurgical patients as they listened to speech, this approach significantly improves the prediction accuracy of auditory cortical responses, particularly in nonprimary areas. Moreover, interpreting the functions learned by neural networks uncovered three distinct types of nonlinear transformations of speech that varied considerably from primary to nonprimary auditory regions. The ability of this framework to capture arbitrary stimulus-response mappings while maintaining model interpretability leads to a better understanding of cortical processing of sensory signals. eLife Sciences Publications, Ltd 2020-06-26 /pmc/articles/PMC7347387/ /pubmed/32589140 http://dx.doi.org/10.7554/eLife.53445 Text en © 2020, Keshishian et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Neuroscience
Keshishian, Menoua
Akbari, Hassan
Khalighinejad, Bahar
Herrero, Jose L
Mehta, Ashesh D
Mesgarani, Nima
Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models
title Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models
title_full Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models
title_fullStr Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models
title_full_unstemmed Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models
title_short Estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models
title_sort estimating and interpreting nonlinear receptive field of sensory neural responses with deep neural network models
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7347387/
https://www.ncbi.nlm.nih.gov/pubmed/32589140
http://dx.doi.org/10.7554/eLife.53445
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