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Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank

Intrinsically disordered protein regions are commonly defined from missing electron density in X-ray structures. Experimental evidence for long disorder regions (LDRs) of at least 30 residues was so far limited to manually curated proteins. Here, we describe a comprehensive and large-scale analysis...

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Autores principales: Monzon, Alexander Miguel, Necci, Marco, Quaglia, Federica, Walsh, Ian, Zanotti, Giuseppe, Piovesan, Damiano, Tosatto, Silvio C. E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7349999/
https://www.ncbi.nlm.nih.gov/pubmed/32599863
http://dx.doi.org/10.3390/ijms21124496
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author Monzon, Alexander Miguel
Necci, Marco
Quaglia, Federica
Walsh, Ian
Zanotti, Giuseppe
Piovesan, Damiano
Tosatto, Silvio C. E.
author_facet Monzon, Alexander Miguel
Necci, Marco
Quaglia, Federica
Walsh, Ian
Zanotti, Giuseppe
Piovesan, Damiano
Tosatto, Silvio C. E.
author_sort Monzon, Alexander Miguel
collection PubMed
description Intrinsically disordered protein regions are commonly defined from missing electron density in X-ray structures. Experimental evidence for long disorder regions (LDRs) of at least 30 residues was so far limited to manually curated proteins. Here, we describe a comprehensive and large-scale analysis of experimental LDRs for 3133 unique proteins, demonstrating an increasing coverage of intrinsic disorder in the Protein Data Bank (PDB) in the last decade. The results suggest that long missing residue regions are a good quality source to annotate intrinsically disordered regions and perform functional analysis in large data sets. The consensus approach used to define LDRs allows to evaluate context dependent disorder and provide a common definition at the protein level.
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spelling pubmed-73499992020-07-15 Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank Monzon, Alexander Miguel Necci, Marco Quaglia, Federica Walsh, Ian Zanotti, Giuseppe Piovesan, Damiano Tosatto, Silvio C. E. Int J Mol Sci Communication Intrinsically disordered protein regions are commonly defined from missing electron density in X-ray structures. Experimental evidence for long disorder regions (LDRs) of at least 30 residues was so far limited to manually curated proteins. Here, we describe a comprehensive and large-scale analysis of experimental LDRs for 3133 unique proteins, demonstrating an increasing coverage of intrinsic disorder in the Protein Data Bank (PDB) in the last decade. The results suggest that long missing residue regions are a good quality source to annotate intrinsically disordered regions and perform functional analysis in large data sets. The consensus approach used to define LDRs allows to evaluate context dependent disorder and provide a common definition at the protein level. MDPI 2020-06-24 /pmc/articles/PMC7349999/ /pubmed/32599863 http://dx.doi.org/10.3390/ijms21124496 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Monzon, Alexander Miguel
Necci, Marco
Quaglia, Federica
Walsh, Ian
Zanotti, Giuseppe
Piovesan, Damiano
Tosatto, Silvio C. E.
Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
title Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
title_full Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
title_fullStr Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
title_full_unstemmed Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
title_short Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
title_sort experimentally determined long intrinsically disordered protein regions are now abundant in the protein data bank
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7349999/
https://www.ncbi.nlm.nih.gov/pubmed/32599863
http://dx.doi.org/10.3390/ijms21124496
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