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Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank
Intrinsically disordered protein regions are commonly defined from missing electron density in X-ray structures. Experimental evidence for long disorder regions (LDRs) of at least 30 residues was so far limited to manually curated proteins. Here, we describe a comprehensive and large-scale analysis...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7349999/ https://www.ncbi.nlm.nih.gov/pubmed/32599863 http://dx.doi.org/10.3390/ijms21124496 |
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author | Monzon, Alexander Miguel Necci, Marco Quaglia, Federica Walsh, Ian Zanotti, Giuseppe Piovesan, Damiano Tosatto, Silvio C. E. |
author_facet | Monzon, Alexander Miguel Necci, Marco Quaglia, Federica Walsh, Ian Zanotti, Giuseppe Piovesan, Damiano Tosatto, Silvio C. E. |
author_sort | Monzon, Alexander Miguel |
collection | PubMed |
description | Intrinsically disordered protein regions are commonly defined from missing electron density in X-ray structures. Experimental evidence for long disorder regions (LDRs) of at least 30 residues was so far limited to manually curated proteins. Here, we describe a comprehensive and large-scale analysis of experimental LDRs for 3133 unique proteins, demonstrating an increasing coverage of intrinsic disorder in the Protein Data Bank (PDB) in the last decade. The results suggest that long missing residue regions are a good quality source to annotate intrinsically disordered regions and perform functional analysis in large data sets. The consensus approach used to define LDRs allows to evaluate context dependent disorder and provide a common definition at the protein level. |
format | Online Article Text |
id | pubmed-7349999 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-73499992020-07-15 Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank Monzon, Alexander Miguel Necci, Marco Quaglia, Federica Walsh, Ian Zanotti, Giuseppe Piovesan, Damiano Tosatto, Silvio C. E. Int J Mol Sci Communication Intrinsically disordered protein regions are commonly defined from missing electron density in X-ray structures. Experimental evidence for long disorder regions (LDRs) of at least 30 residues was so far limited to manually curated proteins. Here, we describe a comprehensive and large-scale analysis of experimental LDRs for 3133 unique proteins, demonstrating an increasing coverage of intrinsic disorder in the Protein Data Bank (PDB) in the last decade. The results suggest that long missing residue regions are a good quality source to annotate intrinsically disordered regions and perform functional analysis in large data sets. The consensus approach used to define LDRs allows to evaluate context dependent disorder and provide a common definition at the protein level. MDPI 2020-06-24 /pmc/articles/PMC7349999/ /pubmed/32599863 http://dx.doi.org/10.3390/ijms21124496 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Communication Monzon, Alexander Miguel Necci, Marco Quaglia, Federica Walsh, Ian Zanotti, Giuseppe Piovesan, Damiano Tosatto, Silvio C. E. Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank |
title | Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank |
title_full | Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank |
title_fullStr | Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank |
title_full_unstemmed | Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank |
title_short | Experimentally Determined Long Intrinsically Disordered Protein Regions Are Now Abundant in the Protein Data Bank |
title_sort | experimentally determined long intrinsically disordered protein regions are now abundant in the protein data bank |
topic | Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7349999/ https://www.ncbi.nlm.nih.gov/pubmed/32599863 http://dx.doi.org/10.3390/ijms21124496 |
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