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Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer

Reliable entity subtyping is paramount for therapy stratification in lung cancer. Morphological evaluation remains the basis for entity subtyping and directs the application of additional methods such as immunohistochemistry (IHC). The decision of whether to perform IHC for subtyping is subjective,...

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Autores principales: Kriegsmann, Mark, Haag, Christian, Weis, Cleo-Aron, Steinbuss, Georg, Warth, Arne, Zgorzelski, Christiane, Muley, Thomas, Winter, Hauke, Eichhorn, Martin E., Eichhorn, Florian, Kriegsmann, Joerg, Christopolous, Petros, Thomas, Michael, Witzens-Harig, Mathias, Sinn, Peter, von Winterfeld, Moritz, Heussel, Claus Peter, Herth, Felix J. F., Klauschen, Frederick, Stenzinger, Albrecht, Kriegsmann, Katharina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7352768/
https://www.ncbi.nlm.nih.gov/pubmed/32560475
http://dx.doi.org/10.3390/cancers12061604
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author Kriegsmann, Mark
Haag, Christian
Weis, Cleo-Aron
Steinbuss, Georg
Warth, Arne
Zgorzelski, Christiane
Muley, Thomas
Winter, Hauke
Eichhorn, Martin E.
Eichhorn, Florian
Kriegsmann, Joerg
Christopolous, Petros
Thomas, Michael
Witzens-Harig, Mathias
Sinn, Peter
von Winterfeld, Moritz
Heussel, Claus Peter
Herth, Felix J. F.
Klauschen, Frederick
Stenzinger, Albrecht
Kriegsmann, Katharina
author_facet Kriegsmann, Mark
Haag, Christian
Weis, Cleo-Aron
Steinbuss, Georg
Warth, Arne
Zgorzelski, Christiane
Muley, Thomas
Winter, Hauke
Eichhorn, Martin E.
Eichhorn, Florian
Kriegsmann, Joerg
Christopolous, Petros
Thomas, Michael
Witzens-Harig, Mathias
Sinn, Peter
von Winterfeld, Moritz
Heussel, Claus Peter
Herth, Felix J. F.
Klauschen, Frederick
Stenzinger, Albrecht
Kriegsmann, Katharina
author_sort Kriegsmann, Mark
collection PubMed
description Reliable entity subtyping is paramount for therapy stratification in lung cancer. Morphological evaluation remains the basis for entity subtyping and directs the application of additional methods such as immunohistochemistry (IHC). The decision of whether to perform IHC for subtyping is subjective, and access to IHC is not available worldwide. Thus, the application of additional methods to support morphological entity subtyping is desirable. Therefore, the ability of convolutional neuronal networks (CNNs) to classify the most common lung cancer subtypes, pulmonary adenocarcinoma (ADC), pulmonary squamous cell carcinoma (SqCC), and small-cell lung cancer (SCLC), was evaluated. A cohort of 80 ADC, 80 SqCC, 80 SCLC, and 30 skeletal muscle specimens was assembled; slides were scanned; tumor areas were annotated; image patches were extracted; and cases were randomly assigned to a training, validation or test set. Multiple CNN architectures (VGG16, InceptionV3, and InceptionResNetV2) were trained and optimized to classify the four entities. A quality control (QC) metric was established. An optimized InceptionV3 CNN architecture yielded the highest classification accuracy and was used for the classification of the test set. Image patch and patient-based CNN classification results were 95% and 100% in the test set after the application of strict QC. Misclassified cases mainly included ADC and SqCC. The QC metric identified cases that needed further IHC for definite entity subtyping. The study highlights the potential and limitations of CNN image classification models for tumor differentiation.
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spelling pubmed-73527682020-07-15 Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer Kriegsmann, Mark Haag, Christian Weis, Cleo-Aron Steinbuss, Georg Warth, Arne Zgorzelski, Christiane Muley, Thomas Winter, Hauke Eichhorn, Martin E. Eichhorn, Florian Kriegsmann, Joerg Christopolous, Petros Thomas, Michael Witzens-Harig, Mathias Sinn, Peter von Winterfeld, Moritz Heussel, Claus Peter Herth, Felix J. F. Klauschen, Frederick Stenzinger, Albrecht Kriegsmann, Katharina Cancers (Basel) Article Reliable entity subtyping is paramount for therapy stratification in lung cancer. Morphological evaluation remains the basis for entity subtyping and directs the application of additional methods such as immunohistochemistry (IHC). The decision of whether to perform IHC for subtyping is subjective, and access to IHC is not available worldwide. Thus, the application of additional methods to support morphological entity subtyping is desirable. Therefore, the ability of convolutional neuronal networks (CNNs) to classify the most common lung cancer subtypes, pulmonary adenocarcinoma (ADC), pulmonary squamous cell carcinoma (SqCC), and small-cell lung cancer (SCLC), was evaluated. A cohort of 80 ADC, 80 SqCC, 80 SCLC, and 30 skeletal muscle specimens was assembled; slides were scanned; tumor areas were annotated; image patches were extracted; and cases were randomly assigned to a training, validation or test set. Multiple CNN architectures (VGG16, InceptionV3, and InceptionResNetV2) were trained and optimized to classify the four entities. A quality control (QC) metric was established. An optimized InceptionV3 CNN architecture yielded the highest classification accuracy and was used for the classification of the test set. Image patch and patient-based CNN classification results were 95% and 100% in the test set after the application of strict QC. Misclassified cases mainly included ADC and SqCC. The QC metric identified cases that needed further IHC for definite entity subtyping. The study highlights the potential and limitations of CNN image classification models for tumor differentiation. MDPI 2020-06-17 /pmc/articles/PMC7352768/ /pubmed/32560475 http://dx.doi.org/10.3390/cancers12061604 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kriegsmann, Mark
Haag, Christian
Weis, Cleo-Aron
Steinbuss, Georg
Warth, Arne
Zgorzelski, Christiane
Muley, Thomas
Winter, Hauke
Eichhorn, Martin E.
Eichhorn, Florian
Kriegsmann, Joerg
Christopolous, Petros
Thomas, Michael
Witzens-Harig, Mathias
Sinn, Peter
von Winterfeld, Moritz
Heussel, Claus Peter
Herth, Felix J. F.
Klauschen, Frederick
Stenzinger, Albrecht
Kriegsmann, Katharina
Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer
title Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer
title_full Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer
title_fullStr Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer
title_full_unstemmed Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer
title_short Deep Learning for the Classification of Small-Cell and Non-Small-Cell Lung Cancer
title_sort deep learning for the classification of small-cell and non-small-cell lung cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7352768/
https://www.ncbi.nlm.nih.gov/pubmed/32560475
http://dx.doi.org/10.3390/cancers12061604
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