Cargando…

Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma

BACKGROUND: The difference in molecular gene mutation profile, tumor mutational burden (TMB) and their prognostic effects in lung adenocarcinoma between different ethnic groups are still unknown. A retrospective analysis was used to investigate the differences in lung adenocarcinoma driver gene muta...

Descripción completa

Detalles Bibliográficos
Autores principales: Gu, Weiquan, Wang, Na, Gu, Weiguang, Qiu, Yuan, Zhang, Hua, Liang, Jianmiao, Zhou, Tongfei, Ma, Liheng, Cai, Weijing, Feng, Weineng, Chen, Likun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7354131/
https://www.ncbi.nlm.nih.gov/pubmed/32676325
http://dx.doi.org/10.21037/tlcr-20-457
_version_ 1783558020767154176
author Gu, Weiquan
Wang, Na
Gu, Weiguang
Qiu, Yuan
Zhang, Hua
Liang, Jianmiao
Zhou, Tongfei
Ma, Liheng
Cai, Weijing
Feng, Weineng
Chen, Likun
author_facet Gu, Weiquan
Wang, Na
Gu, Weiguang
Qiu, Yuan
Zhang, Hua
Liang, Jianmiao
Zhou, Tongfei
Ma, Liheng
Cai, Weijing
Feng, Weineng
Chen, Likun
author_sort Gu, Weiquan
collection PubMed
description BACKGROUND: The difference in molecular gene mutation profile, tumor mutational burden (TMB) and their prognostic effects in lung adenocarcinoma between different ethnic groups are still unknown. A retrospective analysis was used to investigate the differences in lung adenocarcinoma driver gene mutations, TMB, and their impact on prognosis across different ethnic groups. METHODS: The incidence of epidermal growth factor receptor (EGFR) mutations and follow-up data of 647 Chinese lung adenocarcinoma patients were compared with the data from 522 Caucasian patients in The Cancer Genome Atlas (TCGA) database. Moreover, a comprehensive analysis was performed to compare the differences in gene mutation frequency, signaling pathway variation, and TMB using the whole-exome sequencing (WES) data of Chinese patients with that of Caucasian patients. RESULTS: A comparison of tumor signaling pathways and gene mutation profiles between Caucasians and Chinese revealed ethnic variations in the incidence of mutations in TGF-β and RTK-RAS signaling pathways, with P values of 0.012 and 0.016, respectively. In the Caucasian population, the mutations in 5 signaling pathways and 18 genes were all significantly correlated with TMB, whereas in the Chinese population, only mutations in the Notch pathway and 6 genes were found to be associated with TMB-high. EGFR mutations showed a better prognosis in Chinese patients with lung adenocarcinoma, while the opposite was found in Caucasians patients. CONCLUSIONS: Variations in the incidence of mutations in signaling pathways involved in lung adenocarcinoma and the correlation of the signaling pathways with TMB may exist across different ethnic groups.
format Online
Article
Text
id pubmed-7354131
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher AME Publishing Company
record_format MEDLINE/PubMed
spelling pubmed-73541312020-07-15 Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma Gu, Weiquan Wang, Na Gu, Weiguang Qiu, Yuan Zhang, Hua Liang, Jianmiao Zhou, Tongfei Ma, Liheng Cai, Weijing Feng, Weineng Chen, Likun Transl Lung Cancer Res Original Article BACKGROUND: The difference in molecular gene mutation profile, tumor mutational burden (TMB) and their prognostic effects in lung adenocarcinoma between different ethnic groups are still unknown. A retrospective analysis was used to investigate the differences in lung adenocarcinoma driver gene mutations, TMB, and their impact on prognosis across different ethnic groups. METHODS: The incidence of epidermal growth factor receptor (EGFR) mutations and follow-up data of 647 Chinese lung adenocarcinoma patients were compared with the data from 522 Caucasian patients in The Cancer Genome Atlas (TCGA) database. Moreover, a comprehensive analysis was performed to compare the differences in gene mutation frequency, signaling pathway variation, and TMB using the whole-exome sequencing (WES) data of Chinese patients with that of Caucasian patients. RESULTS: A comparison of tumor signaling pathways and gene mutation profiles between Caucasians and Chinese revealed ethnic variations in the incidence of mutations in TGF-β and RTK-RAS signaling pathways, with P values of 0.012 and 0.016, respectively. In the Caucasian population, the mutations in 5 signaling pathways and 18 genes were all significantly correlated with TMB, whereas in the Chinese population, only mutations in the Notch pathway and 6 genes were found to be associated with TMB-high. EGFR mutations showed a better prognosis in Chinese patients with lung adenocarcinoma, while the opposite was found in Caucasians patients. CONCLUSIONS: Variations in the incidence of mutations in signaling pathways involved in lung adenocarcinoma and the correlation of the signaling pathways with TMB may exist across different ethnic groups. AME Publishing Company 2020-06 /pmc/articles/PMC7354131/ /pubmed/32676325 http://dx.doi.org/10.21037/tlcr-20-457 Text en 2020 Translational Lung Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Gu, Weiquan
Wang, Na
Gu, Weiguang
Qiu, Yuan
Zhang, Hua
Liang, Jianmiao
Zhou, Tongfei
Ma, Liheng
Cai, Weijing
Feng, Weineng
Chen, Likun
Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma
title Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma
title_full Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma
title_fullStr Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma
title_full_unstemmed Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma
title_short Molecular gene mutation profiles, TMB and the impact of prognosis in Caucasians and east Asian patients with lung adenocarcinoma
title_sort molecular gene mutation profiles, tmb and the impact of prognosis in caucasians and east asian patients with lung adenocarcinoma
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7354131/
https://www.ncbi.nlm.nih.gov/pubmed/32676325
http://dx.doi.org/10.21037/tlcr-20-457
work_keys_str_mv AT guweiquan moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT wangna moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT guweiguang moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT qiuyuan moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT zhanghua moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT liangjianmiao moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT zhoutongfei moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT maliheng moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT caiweijing moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT fengweineng moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma
AT chenlikun moleculargenemutationprofilestmbandtheimpactofprognosisincaucasiansandeastasianpatientswithlungadenocarcinoma