Cargando…

Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes

Aims: To investigate the interactions among narcolepsy-associated genes and reveal the pathways these genes involved through bioinformatics analyses. Methods: The study was performed with the following steps: 1) Selected the previously discovered narcolepsy risk genes through literature review, 2) p...

Descripción completa

Detalles Bibliográficos
Autores principales: Ouyang, Hui, Zhou, Zechen, Zheng, Qiwen, Zhang, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7359385/
https://www.ncbi.nlm.nih.gov/pubmed/32669953
http://dx.doi.org/10.7150/ijms.41812
_version_ 1783559038569545728
author Ouyang, Hui
Zhou, Zechen
Zheng, Qiwen
Zhang, Jun
author_facet Ouyang, Hui
Zhou, Zechen
Zheng, Qiwen
Zhang, Jun
author_sort Ouyang, Hui
collection PubMed
description Aims: To investigate the interactions among narcolepsy-associated genes and reveal the pathways these genes involved through bioinformatics analyses. Methods: The study was performed with the following steps: 1) Selected the previously discovered narcolepsy risk genes through literature review, 2) pathway enrichment analysis, and construction of gene-gene and protein-protein interaction (PPI) networks for narcolepsy. Results: 1) GO analysis revealed the positive regulation of interferon-gamma production as the most enriched terms in biological process, and C-C chemokine receptor activity as the most enriched term in molecular function, 2) KEGG pathway enrichment analysis revealed selective enrichment of genes in cytokine-cytokine receptor interaction signaling pathways, and 3) five hub genes were identified (IFNAR1, IL10RB, DNMT1, TNFSF4 and NFATC2). Conclusion: The bioinformatics results provide new insights into the molecular pathogenesis of narcolepsy and the identification of potential therapeutic targets for narcolepsy treatment.
format Online
Article
Text
id pubmed-7359385
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Ivyspring International Publisher
record_format MEDLINE/PubMed
spelling pubmed-73593852020-07-14 Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes Ouyang, Hui Zhou, Zechen Zheng, Qiwen Zhang, Jun Int J Med Sci Research Paper Aims: To investigate the interactions among narcolepsy-associated genes and reveal the pathways these genes involved through bioinformatics analyses. Methods: The study was performed with the following steps: 1) Selected the previously discovered narcolepsy risk genes through literature review, 2) pathway enrichment analysis, and construction of gene-gene and protein-protein interaction (PPI) networks for narcolepsy. Results: 1) GO analysis revealed the positive regulation of interferon-gamma production as the most enriched terms in biological process, and C-C chemokine receptor activity as the most enriched term in molecular function, 2) KEGG pathway enrichment analysis revealed selective enrichment of genes in cytokine-cytokine receptor interaction signaling pathways, and 3) five hub genes were identified (IFNAR1, IL10RB, DNMT1, TNFSF4 and NFATC2). Conclusion: The bioinformatics results provide new insights into the molecular pathogenesis of narcolepsy and the identification of potential therapeutic targets for narcolepsy treatment. Ivyspring International Publisher 2020-06-15 /pmc/articles/PMC7359385/ /pubmed/32669953 http://dx.doi.org/10.7150/ijms.41812 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Ouyang, Hui
Zhou, Zechen
Zheng, Qiwen
Zhang, Jun
Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes
title Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes
title_full Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes
title_fullStr Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes
title_full_unstemmed Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes
title_short Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes
title_sort analyzing functional pathways and constructing gene-gene network for narcolepsy based on candidate genes
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7359385/
https://www.ncbi.nlm.nih.gov/pubmed/32669953
http://dx.doi.org/10.7150/ijms.41812
work_keys_str_mv AT ouyanghui analyzingfunctionalpathwaysandconstructinggenegenenetworkfornarcolepsybasedoncandidategenes
AT zhouzechen analyzingfunctionalpathwaysandconstructinggenegenenetworkfornarcolepsybasedoncandidategenes
AT zhengqiwen analyzingfunctionalpathwaysandconstructinggenegenenetworkfornarcolepsybasedoncandidategenes
AT zhangjun analyzingfunctionalpathwaysandconstructinggenegenenetworkfornarcolepsybasedoncandidategenes