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Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes
Aims: To investigate the interactions among narcolepsy-associated genes and reveal the pathways these genes involved through bioinformatics analyses. Methods: The study was performed with the following steps: 1) Selected the previously discovered narcolepsy risk genes through literature review, 2) p...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7359385/ https://www.ncbi.nlm.nih.gov/pubmed/32669953 http://dx.doi.org/10.7150/ijms.41812 |
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author | Ouyang, Hui Zhou, Zechen Zheng, Qiwen Zhang, Jun |
author_facet | Ouyang, Hui Zhou, Zechen Zheng, Qiwen Zhang, Jun |
author_sort | Ouyang, Hui |
collection | PubMed |
description | Aims: To investigate the interactions among narcolepsy-associated genes and reveal the pathways these genes involved through bioinformatics analyses. Methods: The study was performed with the following steps: 1) Selected the previously discovered narcolepsy risk genes through literature review, 2) pathway enrichment analysis, and construction of gene-gene and protein-protein interaction (PPI) networks for narcolepsy. Results: 1) GO analysis revealed the positive regulation of interferon-gamma production as the most enriched terms in biological process, and C-C chemokine receptor activity as the most enriched term in molecular function, 2) KEGG pathway enrichment analysis revealed selective enrichment of genes in cytokine-cytokine receptor interaction signaling pathways, and 3) five hub genes were identified (IFNAR1, IL10RB, DNMT1, TNFSF4 and NFATC2). Conclusion: The bioinformatics results provide new insights into the molecular pathogenesis of narcolepsy and the identification of potential therapeutic targets for narcolepsy treatment. |
format | Online Article Text |
id | pubmed-7359385 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-73593852020-07-14 Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes Ouyang, Hui Zhou, Zechen Zheng, Qiwen Zhang, Jun Int J Med Sci Research Paper Aims: To investigate the interactions among narcolepsy-associated genes and reveal the pathways these genes involved through bioinformatics analyses. Methods: The study was performed with the following steps: 1) Selected the previously discovered narcolepsy risk genes through literature review, 2) pathway enrichment analysis, and construction of gene-gene and protein-protein interaction (PPI) networks for narcolepsy. Results: 1) GO analysis revealed the positive regulation of interferon-gamma production as the most enriched terms in biological process, and C-C chemokine receptor activity as the most enriched term in molecular function, 2) KEGG pathway enrichment analysis revealed selective enrichment of genes in cytokine-cytokine receptor interaction signaling pathways, and 3) five hub genes were identified (IFNAR1, IL10RB, DNMT1, TNFSF4 and NFATC2). Conclusion: The bioinformatics results provide new insights into the molecular pathogenesis of narcolepsy and the identification of potential therapeutic targets for narcolepsy treatment. Ivyspring International Publisher 2020-06-15 /pmc/articles/PMC7359385/ /pubmed/32669953 http://dx.doi.org/10.7150/ijms.41812 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Ouyang, Hui Zhou, Zechen Zheng, Qiwen Zhang, Jun Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes |
title | Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes |
title_full | Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes |
title_fullStr | Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes |
title_full_unstemmed | Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes |
title_short | Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes |
title_sort | analyzing functional pathways and constructing gene-gene network for narcolepsy based on candidate genes |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7359385/ https://www.ncbi.nlm.nih.gov/pubmed/32669953 http://dx.doi.org/10.7150/ijms.41812 |
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