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Enabling a fast annotation process with the Table2Annotation tool
In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to ident...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korea Genome Organization
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7362945/ https://www.ncbi.nlm.nih.gov/pubmed/32634873 http://dx.doi.org/10.5808/GI.2020.18.2.e19 |
_version_ | 1783559584597671936 |
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author | Larmande, Pierre Jibril, Kazim Muhammed |
author_facet | Larmande, Pierre Jibril, Kazim Muhammed |
author_sort | Larmande, Pierre |
collection | PubMed |
description | In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Furthermore, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in certain criteria such as speed, error handling, and complex concept matching. |
format | Online Article Text |
id | pubmed-7362945 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Korea Genome Organization |
record_format | MEDLINE/PubMed |
spelling | pubmed-73629452020-07-23 Enabling a fast annotation process with the Table2Annotation tool Larmande, Pierre Jibril, Kazim Muhammed Genomics Inform Application Note In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Furthermore, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in certain criteria such as speed, error handling, and complex concept matching. Korea Genome Organization 2020-06-15 /pmc/articles/PMC7362945/ /pubmed/32634873 http://dx.doi.org/10.5808/GI.2020.18.2.e19 Text en (c) 2020, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Application Note Larmande, Pierre Jibril, Kazim Muhammed Enabling a fast annotation process with the Table2Annotation tool |
title | Enabling a fast annotation process with the Table2Annotation tool |
title_full | Enabling a fast annotation process with the Table2Annotation tool |
title_fullStr | Enabling a fast annotation process with the Table2Annotation tool |
title_full_unstemmed | Enabling a fast annotation process with the Table2Annotation tool |
title_short | Enabling a fast annotation process with the Table2Annotation tool |
title_sort | enabling a fast annotation process with the table2annotation tool |
topic | Application Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7362945/ https://www.ncbi.nlm.nih.gov/pubmed/32634873 http://dx.doi.org/10.5808/GI.2020.18.2.e19 |
work_keys_str_mv | AT larmandepierre enablingafastannotationprocesswiththetable2annotationtool AT jibrilkazimmuhammed enablingafastannotationprocesswiththetable2annotationtool |