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Enabling a fast annotation process with the Table2Annotation tool

In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to ident...

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Detalles Bibliográficos
Autores principales: Larmande, Pierre, Jibril, Kazim Muhammed
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7362945/
https://www.ncbi.nlm.nih.gov/pubmed/32634873
http://dx.doi.org/10.5808/GI.2020.18.2.e19
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author Larmande, Pierre
Jibril, Kazim Muhammed
author_facet Larmande, Pierre
Jibril, Kazim Muhammed
author_sort Larmande, Pierre
collection PubMed
description In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Furthermore, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in certain criteria such as speed, error handling, and complex concept matching.
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spelling pubmed-73629452020-07-23 Enabling a fast annotation process with the Table2Annotation tool Larmande, Pierre Jibril, Kazim Muhammed Genomics Inform Application Note In semantic annotation, semantic concepts are linked to natural language. Semantic annotation helps in boosting the ability to search and access resources and can be used in information retrieval systems to augment the queries from the user. In the research described in this paper, we aimed to identify ontological concepts in scientific text contained in spreadsheets. We developed a tool that can handle various types of spreadsheets. Furthermore, we used the NCBO Annotator API provided by BioPortal to enhance the semantic annotation functionality to cover spreadsheet data. Table2Annotation has strengths in certain criteria such as speed, error handling, and complex concept matching. Korea Genome Organization 2020-06-15 /pmc/articles/PMC7362945/ /pubmed/32634873 http://dx.doi.org/10.5808/GI.2020.18.2.e19 Text en (c) 2020, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Note
Larmande, Pierre
Jibril, Kazim Muhammed
Enabling a fast annotation process with the Table2Annotation tool
title Enabling a fast annotation process with the Table2Annotation tool
title_full Enabling a fast annotation process with the Table2Annotation tool
title_fullStr Enabling a fast annotation process with the Table2Annotation tool
title_full_unstemmed Enabling a fast annotation process with the Table2Annotation tool
title_short Enabling a fast annotation process with the Table2Annotation tool
title_sort enabling a fast annotation process with the table2annotation tool
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7362945/
https://www.ncbi.nlm.nih.gov/pubmed/32634873
http://dx.doi.org/10.5808/GI.2020.18.2.e19
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